|
Name : HMPREF0462_0893 (HMPREF0462_0893) Accession : YP_005785460.1 Strain : Helicobacter pylori 83 Genome accession: NC_017375 Putative virulence/resistance : Virulence Product : DC-EC Repeat superfamily protein Function : - COG functional category : - COG ID : - EC number : - Position : 880977 - 884453 bp Length : 3477 bp Strand : + Note : COG: COG2948; Pfam: PF07337,PF03743; InterPro: IPR010853 DNA sequence : TTGGATTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAACAAGAATGCGAGAAATTACTCACGCCTGAAGCGAAAAAACT TTTAGAGCAGCAAGCGCTAGATTGTTTAAAAAACGCTAAAACCGAAGCTGAGAAAAAGAGGTGTGTCAAAGATCTCCCTA AAGACTTGCAGAAAAAGGTTTTAGCCAAAGAGAGCGTTAAGGCTTATTTGGATTGCGTATCTCAAGCCAAAACTGAAGCT GAGAAACAAGAATGCGAGAAATTGCTCACGCCTGAAGCGAAAAAACTTTTAGAAGAAGCTAAAGAGAGCCTGAAAGCTTA TAAAGACTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAAAGAATGTGAGAAATTACTCACGCCCGAAGCGAAAAAAC TTTTAGAAGAAGAAGCCAAAGAAAGCGTTAAGGCTTACTTGGATTGCGTATCTCAAGCTAGAACTGAAGCTGAGAAAAAA GAATGCGAAAAATTGCTCACCCCTGAAGCGAGAAAAAAGTTAGAAGAAGCCAAAGAAAGCGTTAAGGCTTACTTGGATTG CGTATCTCAAGCTAGAACTGAAGCTGAGAAAAAAGAATGCGAGAAATTACTCACCCCTGAAGCGAAAAAGCTTTTAGAGC AACAAGCGCTAGATTGTTTGAAAAACGCTAAAACTGATGAAGAACGAAAAAAGTGTTTGAAAGATCTCCCTAAAGACTTG CAGAAAAAGGTTTTAGCCAAAGAGAGCCTGAAAGCTTATAAAGACTGCGTATCTCAAGCCAAAACTGAAGCTGAGAAAAA AGAATGCGAGAAGTTACTCACGCCTGAAGCGAAAAAACTTTTAGAAGAAGCTAAAAAGAGTCTTAAAGCTTATAAAGACT GCGTTTCAAGAGCTAGGAATGAAAAAGAGAAAAAAGAATGCGAGAAGTTACTCACGCCTGAAGCGAAAAAGCTTTTAGAA GAAGCTAAAGAGAGTCTTAAAGCTTATAAAGACTGCGTTTCAAGAGCTAGGAATGAAAAAGAGAAAAAAGAATGCGAGAA GTTACTCACGCCTGAAGCGAGGAAACTTTTAGAGCAACAAGTGCTAGATTGTTTGAAAAGCGCTAAAACCGAAGCTGAGA AAAAAAGGTGTGTCAAAGATATTCCTAAAGACTTGCAGAAAAAGGTTTTAGCCAAAGAGAGCGTTAAGGCTTATTTGGAC TGCGTTTCAAAAGCTAGGAATGAAAAAGAGAAAAAAGAATGCGAGAAATTACTCACGCCTGAAGCGAAAAAACTTTTAGA AGAAGCTAAAGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATGAAGAAGAAAGGAGAGCTTGTGAGA AATTACTCACCCCTGAAGCGAGAAAACTCTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGACTGCGTTTCA AAAGCTAGGAATGAAAAAGAGAAACAAGAATGCGAAAAATTACTCACCCCTGAAGCGAGAAAATTTTTAGCGAAGCAAGT GCTAAGTTGTTTGGAAAAAGCTAGAAATGAAGAAGAAAGAAGAGCATGTCTTAAAAATATCCCTAAAGACTTACAGAAAA ATGTTTTAGCTAAAGAGAGTCTTAAAGCTTATAAAGACTGCCTCTCTCAAGCTAGAAATGAAGAAGAAAGGAGAGCTTGC GAGAAATTACTCACCCCTGAAGCGAGAAAACTTTTAGAGCAAGAAGTTAAGAAGAGCGTTAAGGCTTATTTGGACTGCGT TTCAAAAGCTAGGAATGAAAAAGAGAAACAAGAATGCGAGAAATTACTCACCCCTGAAGCGAGAAAATTTTTAGCGAAAG AACTCCAACAAAAAGATAAAGCGATCAAAGATTGCTTGAAAAACGCCGATCCTAACGACAGAGCGGCTATTATGAAGTGT TTGGATGGTTTGAGCGATGAAGAGAAGCTCAAATACCTGCAAGAAGCTAGAGAAAAGGCTGTCTTGGATTGTTTGAAAAC GGCTAGGACCGATGAAGAAAAAAGGAAATGTCAAAACCTTTATAGCGATTTGATCCAAGAAATCCAAAATAAAAGAATAC AAAGCAAACAAAATCAATTGAGTAAAACAGAAAGATTGCATCAAGCAAGCGAGTGCTTGGATAACTTAGATGACCCTACC GATCAAGAAGCCATAGAGCAATGTTTAGAGGGCTTGAGCGATAGTGAAAGGGCGCTAATTCTAGGAATTAAACGACAAGC TGATGAAGTGGATCTGATTTATAGCGATCTAAGAAACCGCAAAACCTTCGATAACATGGCGGCTAAAGGTTATCCATTGT TGCCAATGGATTTCAAAAATGGCGGCGATATTGCCACTATTAACGCCACTAATGTTGATGCGGACAAAATAGCTAGCGAT AATCCTATTTATGCTTCCATAGAGCCTGATATTACTAAGCAATACGAAACAGAAAAAACCATTAAGGATAAGAATTTAGA AGCTAAATTAGCTAAGGCTTTAGGTGGCAATAAAAAAGATGACGATAAAGAAAAAAGTAAAAAATCCACAGCAGAAGCTA GAGTAGAAAGCAATAAGATAGACAAAGATGTCGCAGAAACTGCCAAAAATATCAGTGAAATCGCTCTTAAGAACAAAAAA GAAAAGAGTGGGGAATTTGTAGATGAAAATGGTAATCCCATTGATGACAAAAAGAAAACAGAAAAACAAGATGAAACAAG CCCTGTCAAACAGGCCTTTATAGGCAAGAGTGATCCCACATTTGTTTTAGCGCAATACACCCCTATTGAAATCACTCTGA CTTCTAAAGTAGATGCCACTCTCACAGGTATAGTGAGTGGGGTTGTAGCCAAAGATGTATGGAACATGAACGGCACTATG ATCTTACTAGACAAAGGCACTAAGGTGTATGGGAATTACCAAAGCGTGAAAGGTGGCACACCCATTATGACACGCTTAAT GATAGTCTTTACTAAAGCCATTACGCCTGATGGTGTGATAATACCTCTAGCAAACGCTCAAGCAGCAGGCATGCTGGGTG AAGCAGGGGTAGATGGCTATGTGAATAATCACTTTATGAAGCGCATAGGCTTTGCTGTGATAGCAAGCGTGGTTAATAGC TTCTTGCAAACTGCGCCTATCATAGCTCTAGATAAACTCATAGGCCTTGGCAAAGGTAGAAGTGAAAGGACACCTGAATT TAATTACGCTTTGGGTCAAGCTATCAATGGTAGTATGCAAAGTTCAGCTCAGATGTCTAATCAAATTCTAGGGCAACTGA TGAATATCCCCCCAAGTTTTTACAAAAATGAGGGCGATAGTATTAAGATTCTCACAATGGACGATATTGATTTTAGTGGC GTGTATGATGTTAAAATTACCAACAAATCTGTGGTAGATGAAATTATCAGACAAAGCACTAAAACTTTGTCTAGAGAGCA TGAAGAAATCACCACAAGCCCCAAAGGTGGCAATTAA Protein sequence : MDCVSQAKTEAEKQECEKLLTPEAKKLLEQQALDCLKNAKTEAEKKRCVKDLPKDLQKKVLAKESVKAYLDCVSQAKTEA EKQECEKLLTPEAKKLLEEAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEEAKESVKAYLDCVSQARTEAEKK ECEKLLTPEARKKLEEAKESVKAYLDCVSQARTEAEKKECEKLLTPEAKKLLEQQALDCLKNAKTDEERKKCLKDLPKDL QKKVLAKESLKAYKDCVSQAKTEAEKKECEKLLTPEAKKLLEEAKKSLKAYKDCVSRARNEKEKKECEKLLTPEAKKLLE EAKESLKAYKDCVSRARNEKEKKECEKLLTPEARKLLEQQVLDCLKSAKTEAEKKRCVKDIPKDLQKKVLAKESVKAYLD CVSKARNEKEKKECEKLLTPEAKKLLEEAKESLKAYKDCLSQARNEEERRACEKLLTPEARKLLEQEVKKSVKAYLDCVS KARNEKEKQECEKLLTPEARKFLAKQVLSCLEKARNEEERRACLKNIPKDLQKNVLAKESLKAYKDCLSQARNEEERRAC EKLLTPEARKLLEQEVKKSVKAYLDCVSKARNEKEKQECEKLLTPEARKFLAKELQQKDKAIKDCLKNADPNDRAAIMKC LDGLSDEEKLKYLQEAREKAVLDCLKTARTDEEKRKCQNLYSDLIQEIQNKRIQSKQNQLSKTERLHQASECLDNLDDPT DQEAIEQCLEGLSDSERALILGIKRQADEVDLIYSDLRNRKTFDNMAAKGYPLLPMDFKNGGDIATINATNVDADKIASD NPIYASIEPDITKQYETEKTIKDKNLEAKLAKALGGNKKDDDKEKSKKSTAEARVESNKIDKDVAETAKNISEIALKNKK EKSGEFVDENGNPIDDKKKTEKQDETSPVKQAFIGKSDPTFVLAQYTPIEITLTSKVDATLTGIVSGVVAKDVWNMNGTM ILLDKGTKVYGNYQSVKGGTPIMTRLMIVFTKAITPDGVIIPLANAQAAGMLGEAGVDGYVNNHFMKRIGFAVIASVVNS FLQTAPIIALDKLIGLGKGRSERTPEFNYALGQAINGSMQSSAQMSNQILGQLMNIPPSFYKNEGDSIKILTMDDIDFSG VYDVKITNKSVVDEIIRQSTKTLSREHEEITTSPKGGN |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cag-Y | AAF80198.1 | Cag-Y | Virulence | cag PAI | Protein | 0.0 | 78 |
