Gene Information

Name : HMPREF0462_0890 (HMPREF0462_0890)
Accession : YP_005785457.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 875821 - 877428 bp
Length : 1608 bp
Strand : +
Note : -

DNA sequence :
ATGTTTAATATTAAAAGGACTTTTTTAGTAGCGATCATAAGTTTTTTTCTCATTATTCCTAATTGGTTAAAAGCTATTGA
TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGTATGCTGATACCGAGTTATGTTTTAACCAACAAAA
GTTTTGCAGATATTTTGACAGGCTATACATCTATTGGTGCATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA
GCGCTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAATACTTTAGGTCCTTTATGGGG
ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGTTTTGCTCTAACGCCATCAAGTGGTTGCAATTTTGGTTGGAATG
CATTGATAAATAAAAACATAGATGTATCCATGGATAGCATGCTAGACAATTTGAGCAACAAGATTCGGAATTTTACCAAA
GGCGGTATTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAGCTCAATAACCGCTCAAGCTTCTACGAATAT
TACAGCTGATGGTTTAATTTGGCTGATTGGTAAAGAATTCACTGCAAATAAACTGCAAAACAACGCTACAGCCATGCTTG
CTTTTGCCGCACTGGAATCTGTTGTCAAAGGAGCGGATGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT
ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTTATTTC
TTTTATGAAATTGAGAGATATTTCAAATGGTATTCAGATTAACATAGGTTTTGAATACATGCGATTTGTTGGGGGGACAT
TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT
GGTTTAGCAGGTGCTTTTGGGTTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT
TTTACCTGCAGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGCA
TTTCTTTATTCGCTATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTTGTTGTGAAACCTTTGATAGCGGGG
GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT
GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTGCTCTTTGGTGTTTTGGCATTATTGGCAT
TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGATTGGGTATCGATTCGACTATTGCGAGT
TTGATCACTTTATTTATTTTAAAAGGTTTCATAGAAACGATTATTGAGAGTGTTAATGCGATCGTTAATACCATTTTCAG
CTCTGTATCTATGGATGGTAGCAGAATGGATAGAGAAAGAGATGCCTTAATGATAGGAAGAGTTGGTGGATCTATGTTTA
AAGGATAA

Protein sequence :
MFNIKRTFLVAIISFFLIIPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGASGSGKSSGQGVIE
ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSMLDNLSNKIRNFTK
GGIEDNVKGNVLLQIISSITAQASTNITADGLIWLIGKEFTANKLQNNATAMLAFAALESVVKGADAAVLPAYGVVNLPD
IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFVGGTLFKMAMVSFIAYAGFGYLYKISYSIYF
GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG
AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS
LITLFILKGFIETIIESVNAIVNTIFSSVSMDGSRMDRERDALMIGRVGGSMFKG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0529 BAD14054.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005779061.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13808.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14000.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005774540.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13862.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005777273.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD14028.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13945.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
cagW YP_005775732.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13835.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13781.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 99
HP0529 BAD13917.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03892.1 Cag9 Virulence cag PAI Protein 0.0 98
cagW YP_003728735.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cag9 AAR03864.1 Cag9 Virulence cag PAI Protein 0.0 98
cag9 AAR03953.1 Cag9 Virulence cag PAI Protein 0.0 98
HP0529 NP_207325.1 cag pathogenicity island protein (cag9) Virulence cag PAI Protein 0.0 98
HP0529 BAD13972.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cag9 AAR03922.1 Cag9 Virulence cag PAI Protein 0.0 98
orf16 NP_223196.1 cag island protein Virulence cag PAI Protein 0.0 98
HP0529 BAD13890.1 cag pathogenicity island protein Virulence cag PAI Protein 0.0 98
cagW AGC69796.1 cag pathogenicity island protein W Virulence cag PAI Protein 0.0 98
cag-W AAF80200.1 Cag-W Virulence cag PAI Protein 0.0 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0890 YP_005785457.1 cag pathogenicity island protein VFG0289 Protein 0.0 98