Gene Information

Name : HMPREF0462_0889 (HMPREF0462_0889)
Accession : YP_005785456.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 875058 - 875816 bp
Length : 759 bp
Strand : +
Note : COG: COG3736; Pfam: PF04335; InterPro: IPR007430

DNA sequence : 
ATGTTAGGGAAAAAAAACGAGGAAGTCTTGATTGATGAAAATTTAGTTGGGGGTGTGATAGCCCTTGATAGATTGGCAAA
ACTCAATAAGGCCAATAGGACTTTCAAAAGGGCCTTTTATCTCTCTATGGCACTCAATATCGTCGCTGTAACAAGTATTG
TGATGATGATGCCTTTGAAGAAAACAGATATATTTGTTTATGGCATTGATCGATACACAGGAGAATTTAAAATTGTCAAA
CGCTCCGATGCTAGACAAATTGTCAATTCTGAAGCTGTTGTGGATAGTGCAACTTCAAAATTTGTTTCATTGTTGTTTGG
TTATAGCAAAAATTCTTTGAGGGATCGCAAGGATCAACTAATGCAGTATTGCGATGTGAGTTTCCAAACCCAAGCAATGA
GAATGTTCAATGAAAATATCAGACAATTTGTAGATAAAGTCCGAGCAGAAGCTATCATTAGCTCCAACATACAAAGAGAA
AAAGTCAAAGATAGTCCCTTAACGAGATTAACATTTTTCATTACCATCAAAATCACACCTGATACAATGGAAAATTATGA
ATATATTACTAAAAAACAAGTAACTATTTATTATGATTTTGCCAGAGGTAACTCTTCTCAAGAAAATCTCATCATCAATC
CTTTTGGCTTCAAAGTGTTTGACATTCAAATCACAGATTTACAAAACGAACAGACGGTAAGCGAAATTTTGAGAAAGATT
AAAGAAGTGGAATCAAAAAATAAGGCATTAAAGCAATAA

Protein sequence : 
MLGKKNEEVLIDENLVGGVIALDRLAKLNKANRTFKRAFYLSMALNIVAVTSIVMMMPLKKTDIFVYGIDRYTGEFKIVK
RSDARQIVNSEAVVDSATSKFVSLLFGYSKNSLRDRKDQLMQYCDVSFQTQAMRMFNENIRQFVDKVRAEAIISSNIQRE
KVKDSPLTRLTFFITIKITPDTMENYEYITKKQVTIYYDFARGNSSQENLIINPFGFKVFDIQITDLQNEQTVSEILRKI
KEVESKNKALKQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0530 BAD13809.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 99
HP0530 BAD13863.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 99
cag10 AAR03893.1 Cag10 Virulence cag PAI Protein 2e-113 99
HP0530 BAD13946.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
cagV YP_005779060.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-113 99
cag-V AAF80201.1 Cag-V Virulence cag PAI Protein 1e-113 99
cag10 AAR03865.1 Cag10 Virulence cag PAI Protein 8e-113 99
cagV YP_005775733.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-113 99
cagV AGC69797.1 cag pathogenicity island protein V Virulence cag PAI Protein 1e-113 99
cag10 AAR03923.1 Cag10 Virulence cag PAI Protein 8e-113 99
cagV YP_003728734.1 cag pathogenicity island protein V Virulence cag PAI Protein 2e-113 99
HP0530 BAD14001.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
cag10 AAR03954.1 Cag10 Virulence cag PAI Protein 7e-113 99
HP0530 BAD13782.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-113 99
cagV YP_005774539.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 99
HP0530 BAD14055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 99
cagV YP_005777274.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 99
HP0530 BAD13836.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 99
HP0530 NP_207326.1 cag pathogenicity island protein (cag10) Virulence cag PAI Protein 2e-112 98
HP0530 BAD14029.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-113 98
orf17 NP_223197.1 cag island protein Virulence cag PAI Protein 2e-112 98
HP0530 BAD13918.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 98
HP0530 BAD13891.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 98
HP0530 BAD13973.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-111 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0889 YP_005785456.1 cag pathogenicity island protein VFG0290 Protein 7e-113 98