Gene Information

Name : HMPREF0462_0887 (HMPREF0462_0887)
Accession : YP_005785454.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : CAG pathogenicity island protein 12
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 873279 - 874121 bp
Length : 843 bp
Strand : -
Note : -

DNA sequence : 
ATGAAACTGAGAGCAAGTGTTTTAATCGGTGCGACAATTCTGTGCTTAATTTTAAGCGCATGCAGTAATTATGCGAAAAA
AGTGGTGAAACAAAAGAACCATGTTTATACGCCTGTGTATAATGAACTGATAGAGAAGTATAGTGAGATACCCTTAAATG
ACAAACTCAAAGACACACCATTCATGGTGCAAGTGAAGTTGCCAAATTACAGAGACTATTTGTTGGATAATAAACAAGTT
GTATTAACTTTCAAACTTGTTCATCATTCTAAGAAGATTACGCTCATAGGCGATGCCAATAAGATACTTCAATACAAGAA
TTACTTCCAAGCTAATGGAGCAAGATCTGACATTGATTTTTACTTGCAGCCTACTTTGAATCAAAAGGGTGTGGTGATGA
TAGCGAGTAACTATAATGATAATCCCAACAACAAAGAACAACCACAGACCTTTGATGTGTTGCAAGGAAGTCAGCCAATG
CTAGGAGCTAATACAAAAAACTTGCATGGCTATGATGTGAGTGGAGCAAACAACAAGCAAGTGATCAATGAAGTGGCAAG
AGAAAAAGCTCAGCTAGAAAAAATCAATCAGTATTACAAAATGCTCTTACAAGACAAGGAACAAGAATATACCACTAGGA
AAAATAACCAACGAGAAATTTTAGAAACATTGAGTAATCGTGCAGGTTATCAAATGAGGCAGAATGTGATTAGTTCTGAG
ATTTTTAAGAATGGCAACTTGAACATGCAAGCCAAAGAAGAAGAAGTTAGGGAGAAGCTACAAGAAGAAAGAGAGAATGA
ATACTTGCGTAATCAAATCAGAAGTTTGCTCAGTGGTAAGTGA

Protein sequence : 
MKLRASVLIGATILCLILSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTPFMVQVKLPNYRDYLLDNKQV
VLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDFYLQPTLNQKGVVMIASNYNDNPNNKEQPQTFDVLQGSQPM
LGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYKMLLQDKEQEYTTRKNNQREILETLSNRAGYQMRQNVISSE
IFKNGNLNMQAKEEEVREKLQEERENEYLRNQIRSLLSGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag12 AAR03895.1 Cag12 Virulence cag PAI Protein 6e-118 99
cagT AAF80203.1 CagT Virulence cag PAI Protein 2e-117 99
cagT NP_223199.1 cag island protein Virulence cag PAI Protein 2e-117 99
HP0532 BAD13838.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
cagT YP_003728732.1 cag pathogenicity island protein T Virulence cag PAI Protein 8e-118 99
HP0532 BAD13811.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 NP_207328.1 cag pathogenicity island protein (cag12) Virulence cag PAI Protein 8e-118 99
HP0532 BAD13784.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 99
HP0532 BAD14031.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-118 99
cagT YP_005777276.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD13893.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 99
cag12 AAR03867.1 Cag12 Virulence cag PAI Protein 9e-118 99
cagT YP_005779058.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD13948.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 99
HP0532 BAD13920.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-118 99
cagT YP_005774537.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD14057.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-118 99
cagT AGC69799.1 cag pathogenicity island protein T Virulence cag PAI Protein 6e-118 99
cagT YP_005775735.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-118 99
HP0532 BAD13865.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-119 99
HP0532 BAD14003.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-118 99
cag12 AAR03925.1 Cag12 Virulence cag PAI Protein 2e-117 98
cag12 AAR03956.1 Cag12 Virulence cag PAI Protein 2e-117 98
HP0532 BAD13975.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-117 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0887 YP_005785454.1 CAG pathogenicity island protein 12 VFG0292 Protein 3e-118 99