Gene Information

Name : HMPREF0462_0883 (HMPREF0462_0883)
Accession : YP_005785450.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 871287 - 871667 bp
Length : 381 bp
Strand : -
Note : -

DNA sequence : 
ATGCTCTCTGCTAAAACACGCATTAGAACTCAGAGCAAGCAAGAACTTGTGCAACCAAAAATAAAAGGATTGGTTATGGG
AAAAATTTTAGCTTCTTTGTTGGGTGGCGGAACAAATCTTTTTACAGGTTTATCTAGTGATCTGTTTTCTATGATATTAA
ATTTTTTGTTCTTTCTAATGTTAATGATGGGACTTAATGAAATATTAGAGAAGAAATTCAACTTACCCATGGATAATATC
AAGAATTTTATGACGGAAGTGCTGAAGAATGGATTTGGTAGTATGAAAAACATGGGATCTGCTTTGATTGGCAATGGTTT
TAGCAGTAGCAAATCAGAAAAAACCGCTAATAAAATGAGTGTCCCCCAAGTAAAACTTTAG

Protein sequence : 
MLSAKTRIRTQSKQELVQPKIKGLVMGKILASLLGGGTNLFTGLSSDLFSMILNFLFFLMLMMGLNEILEKKFNLPMDNI
KNFMTEVLKNGFGSMKNMGSALIGNGFSSSKSEKTANKMSVPQVKL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0535 BAD13951.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-32 100
HP0535 BAD14033.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-27 87
cagQ AAC44691.1 CagQ Virulence cag PAI Protein 9e-27 87
cag14 AAR03897.1 Cag14 Virulence cag PAI Protein 9e-27 87
cag14 AAR03958.1 Cag14 Virulence cag PAI Protein 9e-27 87
cagQ NP_223201.1 cag island protein Virulence cag PAI Protein 2e-26 87
HP0535 NP_207331.1 cag pathogenicity island protein (cag14) Virulence cag PAI Protein 5e-27 86
HP0535 BAD13868.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-26 86
cag14 AAR03927.1 Cag14 Virulence cag PAI Protein 3e-26 86
cag14 AAR03869.1 Cag14 Virulence cag PAI Protein 2e-26 86
cagQ YP_003728730.1 cag pathogenicity island protein Q Virulence cag PAI Protein 7e-26 85

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0883 YP_005785450.1 cag pathogenicity island protein VFG0294 Protein 1e-27 86