Gene Information

Name : HMPREF0462_0881 (HMPREF0462_0881)
Accession : YP_005785448.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 870082 - 870426 bp
Length : 345 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACAGCCAATTAGCAAATTAAAACAAAACTTCTTACAATTCAAACATTCTTTCAATAAACATTTAGATAAGTACAG
CCTTTATTATAGGCTGTTCAATATCAGCTCTATCGTTATAGGTTTTTTAATAGGGCTTTTTTCTTATGGGGCAGGGGTGA
TTTTAGTTTATCCAATATTATTCTTATTTGCTCTTATAATAAAACCTAGCTTTTTTTATTACACTACTTATCTTTTGCTA
CTCGTTTCTCTCAGCATAATAAGCAAATACTATCTCTTAAGCCACGCAAATTTCACAATGAAGCTAATCATGCTTATGAC
TCAATGGCAAAATTGGTTTTTGTAA

Protein sequence : 
MKQPISKLKQNFLQFKHSFNKHLDKYSLYYRLFNISSIVIGFLIGLFSYGAGVILVYPILFLFALIIKPSFFYYTTYLLL
LVSLSIISKYYLLSHANFTMKLIMLMTQWQNWFL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0536 BAD13924.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-32 99
cagP NP_223202.1 cag island protein Virulence cag PAI Protein 3e-32 99
cag15 AAR03928.1 Cag15 Virulence cag PAI Protein 1e-32 99
HP0536 BAD13897.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-33 99
HP0536 BAD13869.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-32 99
HP0536 BAD13952.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-33 99
HP0536 BAD14034.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-32 99
HP0536 BAD14007.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-33 99
HP0536 BAD13815.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-32 98
cag15 AAR03959.1 Cag15 Virulence cag PAI Protein 1e-32 98
HP0536 BAD13979.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-29 98
cag15 AAR03870.1 Cag15 Virulence cag PAI Protein 6e-32 98
HP0536 BAD14061.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-32 98
cagP AAF80206.1 CagP Virulence cag PAI Protein 3e-29 97
HP0536 BAD13788.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-32 97
HP0536 BAD13842.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-31 97
HP0536 NP_207332.1 cag pathogenicity island protein (cag15) Virulence cag PAI Protein 1e-31 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0881 YP_005785448.1 cag pathogenicity island protein VFG0295 Protein 3e-32 97