Gene Information

Name : HMPREF0462_0879 (HMPREF0462_0879)
Accession : YP_005785446.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 867593 - 868513 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
AAAAAGAAGTTACAGAAGAGGAAAAAAAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAACACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAAAGACAACCCTAATAGCAATTCTTCCACTGAAACCAAATCCA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTAAT
GAATGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGACATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCTTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAACAACCACCAAGATACTACAAATGCAAGTGAGTTTGGAGT
TACTGATACAAAAGAAAGCGAAGCAAAAGATGCAGCGTTCTCAAACAATCGCTCTAAATCTGAATTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTFHQRHDEKEVTEEEKKFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLKDNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPN
EWRTPEIEIIINECIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNHQDTTNASEFGVTDTKESEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-118 99
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-118 99
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-118 99
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-118 99
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-118 99
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-118 99
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-118 99
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-120 98
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-118 98
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-116 98
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-121 98
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-120 96
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-120 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 3e-118 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 4e-114 95
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 4e-117 95
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 2e-117 95
cagN AAF80207.2 CagN Virulence cag PAI Protein 5e-117 94
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-117 94
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 7e-116 94
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 3e-116 94
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 1e-117 94
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-115 93
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 6e-116 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0879 YP_005785446.1 cag pathogenicity island protein VFG0297 Protein 2e-117 95