Gene Information

Name : HMPREF0462_0876 (HMPREF0462_0876)
Accession : YP_005785443.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 864532 - 865644 bp
Length : 1113 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAGGTACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTGTCGGAAATTTCCTCAATCATCTCAAGCACGAG
TGGTGTCGCAGGGCCATTTGCAGGAATAGTAGCGGGTGCTATGTCAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCACAAATGACCGCTATCATGACCCAATACAATCAAAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATTAGCAAATT
AACAGGGGAGTTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTAGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACGACCCCTAAAAATCCTAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACA
ACGGTTGAAATGATGAGCGGTATCTTAGGCAATATTACAAGTGCAGCACCGAAATACGCCCTAGCTCTACAAGAGCAATT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCGCTTGCTA
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTGGCCGCTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCTCTATTGGGGACAAAGT
TCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTAAAATCGCATTTGACTTATCTTGATTACAT
CAAAGACAAACTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMSAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAK
YQALAANALTSGVNPMTTPACSIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-159 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-158 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 1e-158 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 2e-159 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 3e-158 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 1e-158 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-158 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 99
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-159 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 5e-159 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-159 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-159 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 7e-160 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 4e-159 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 4e-159 99
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 5e-158 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 4e-159 99
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 5e-159 98
cagH AAC44699.1 CagH Virulence cag PAI Protein 2e-160 98
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-157 98
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-157 98
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-158 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 5e-158 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0876 YP_005785443.1 cag pathogenicity island protein VFG0300 Protein 2e-158 98