Gene Information

Name : HMPREF0462_0872 (HMPREF0462_0872)
Accession : YP_005785439.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 859635 - 860276 bp
Length : 642 bp
Strand : +
Note : -

DNA sequence : 
GTGGAGGAGCTAGCTAAATTGATCAACAATAATAGCAATAAAAAAATAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTAT
CGTTGTTTTCAGTTCGTATGGATCAGCAAATGATGATAAAGAAGCCAAAAAAGAAGCACTAGAAAAAGAAAAAAACACTC
CTAGTGGGCGTGTTTATACGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACT
TTCAAAGAAGTCAATCCCGATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAA
GGATTTGAAGCATTACGATCCAATCATTGAAAAAATCTTTGATGAAAAGGGTAAGGAAATGGGATTGAATGTAGAATTAC
AGATCAATCCTGAAGTGAAAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTATCATTA
CGCGGAGAAACAAGAGAAATTTTATGCGATGATAAGCTATATAATGTTTTATTGGCCGTATTCAATTCTTATGACCCTAA
TGATCTTTTGAAACACATTAGCACCGTAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTAT
AA

Protein sequence : 
MEELAKLINNNSNKKIRDFFLKVLLSIVVFSSYGSANDDKEAKKEALEKEKNTPSGRVYTNLDFDSFKATIKNLKDKKVT
FKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSL
RGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTVESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 5e-82 98
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-83 98
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 4e-83 98
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-83 97
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 2e-81 97
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-82 97
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 1e-81 97
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-82 97
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 3e-81 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-81 96
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-82 96
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-81 96
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-80 96
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 5e-80 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-82 96
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-81 96
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-81 96
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 1e-78 96
cagD AAF80210.1 CagD Virulence cag PAI Protein 1e-78 96
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-81 95
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-81 95
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-81 95
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-80 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HMPREF0462_0872 YP_005785439.1 cag pathogenicity island protein VFG0304 Protein 2e-80 96