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Name : xerD (HMPREF0462_0080) Accession : YP_005784647.1 Strain : Helicobacter pylori 83 Genome accession: NC_017375 Putative virulence/resistance : Unknown Product : integrase/recombinase Function : - COG functional category : - COG ID : - EC number : - Position : 79123 - 80088 bp Length : 966 bp Strand : + Note : COG: COG0582; Pfam: PF00589; InterPro: IPR013762 DNA sequence : ATGCTAAATAACAAACTCACCAAATCTCAAAGAGAACTCTTTGATAATCTTAAAGCCTTTTTATACACTAATGTTAAAAA CTTCACGCCTATTCAAGATGTGAATGATATGGCTTTGATATTAAACACACAAGATAAAATCTTAAAATGCCACAATATAG AGCAATTAAAACAACTCTGTCATATTCTTTACAATCAAGGTATCAAACACACCGTAATGATGCAAGGCTTGTTTTTATTC TTTGACTATTTTAAGGATAATCTCAAATTAAGAAGTTTTAGAATGCTTAGCGAAGAGCAAGTCATTAACTTTCTTTTTGA ACTCGCTCAAAATAGAAAGCCAAGCTCTATGGCTAAATATGTGATGTATTTAAGACAATTCTTTGATTACTTGGATAGGA AAAAGCATTATAGCTTTGATTTTGTTCTTAAAAACCTAGCCTTTGCTAAAACCAAAGAAAGTCTGCCTAGACATTTAAAC TACAAGGATTTAAAGGCATTCTTAAAAACACTCTTAGAGTATAGTCCAGCCACAAGTTTTGAAAAGCGTAATAAGTGTAT TCTACTCATTGTAATACTTGGGGGGCTTAGAAAATGCGAAGTATTAAACATAGAATTAAAACATATTCAAGTAGAAGAAC AAAACTACTCTATTTTAATTCAAGGCAAAGGGAGAAAAGAAAGAAAGGCTTATATCAAAAAGAGTTTGTTAGAACCAAGC TTGAATGCTTGGCTTAGTGATGATTATAGATTAAAATACTTTAATGGGGTATATCTCTTTAAAAAGGATAAGCAAAAAGC ACAAAATTCTTTAACGCTCTATAACTTTATCCCCTTAATCTTTAAACTAGCTCAAATCAAACATTACAAACAATATGGCA CAGGCTTACATCTATTTAGGCATAGTTTTGCAACTCTTATCTATCAAGAAACACAAGACTTGGTTTTAACTTCAAGGGCG TTATGA Protein sequence : MLNNKLTKSQRELFDNLKAFLYTNVKNFTPIQDVNDMALILNTQDKILKCHNIEQLKQLCHILYNQGIKHTVMMQGLFLF FDYFKDNLKLRSFRMLSEEQVINFLFELAQNRKPSSMAKYVMYLRQFFDYLDRKKHYSFDFVLKNLAFAKTKESLPRHLN YKDLKAFLKTLLEYSPATSFEKRNKCILLIVILGGLRKCEVLNIELKHIQVEEQNYSILIQGKGRKERKAYIKKSLLEPS LNAWLSDDYRLKYFNGVYLFKKDKQKAQNSLTLYNFIPLIFKLAQIKHYKQYGTGLHLFRHSFATLIYQETQDLVLTSRA L |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HPP12_0437 | YP_002301073.1 | integrase/recombinase XercD family | Not tested | cag PAI | Protein | 4e-88 | 61 |
