Gene Information

Name : fliP (HMPREF0462_0744)
Accession : YP_005785311.1
Strain : Helicobacter pylori 83
Genome accession: NC_017375
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 721808 - 722554 bp
Length : 747 bp
Strand : +
Note : COG: COG1338; Pfam: PF00813; InterPro: IPR005837

DNA sequence : 
TTGCGTTTTTTCATTTTTTTAATCCTCATTTGCCCTTTAATATGCCCTTTAATGAGCGCTGATAGCGCATTGCCCAGCGT
CAATCTCTCTTTAAACGCTCCTAATGATCCTAAACAGCTTGTAACCACCCTTAATGTTATCGCCCTACTCACGCTGTTAG
TTTTAGCCCCGTCATTGATTTTAGTGATGACGAGTTTCACCCGTTTGATCGTGGTATTTTCTTTTTTAAGGACCGCTTTA
GGCACGCAACAAACCCCACCCACTCAAATTTTAGTTTCGCTCTCTTTGATATTGACTTTTTTCATCATGGAACCTAGCTT
GAAAAAGGCTTATGATACAGGGATTAAGCCTTATATGGATAAAAAAATTTCTTACACTGAAGCGTTTGAAAAAAGCACTC
TGCCTTTCAAAGAATTCATGCTTAAAAACACACGAGAAAAGGATCTAGCCCTTTTTTTTAGGATTAGAAACCTCCCTAAC
CCTAAAACCCCTGATGAGGTGAGTTTGAGCGTTTTAATCCCGGCATTTATGATAAGCGAGTTGAAAACAGCGTTTCAAAT
CGGCTTTTTACTCTACTTGCCTTTTTTGGTGATTGATATGGTTATTAGCTCTATTTTAATGGCGATGGGCATGATGATGC
TCCCGCCTGTAATGATTTCTCTGCCTTTTAAAATTTTAGTGTTTATTCTGGTAGATGGGTTTAATTTATTGACCGAGAAT
TTAGTAGCGAGTTTTAAAATGGTTTAA

Protein sequence : 
MRFFIFLILICPLICPLMSADSALPSVNLSLNAPNDPKQLVTTLNVIALLTLLVLAPSLILVMTSFTRLIVVFSFLRTAL
GTQQTPPTQILVSLSLILTFFIMEPSLKKAYDTGIKPYMDKKISYTEAFEKSTLPFKEFMLKNTREKDLALFFRIRNLPN
PKTPDEVSLSVLIPAFMISELKTAFQIGFLLYLPFLVIDMVISSILMAMGMMMLPPVMISLPFKILVFILVDGFNLLTEN
LVASFKMV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 46
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-22 46
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 1e-25 45
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 9e-26 45
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 1e-25 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 4e-21 45
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-21 45
escR AAC38369.1 EscR Virulence LEE Protein 2e-20 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 5e-21 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 5e-21 45
escR AAK26700.1 EscR Virulence LEE Protein 4e-21 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 5e-21 45
escR AAL57527.1 EscR Virulence LEE Protein 4e-21 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-21 45
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-21 45
escR AAC31528.1 L0049 Virulence LEE Protein 4e-21 45
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-21 45
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 6e-25 44
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 6e-25 44
unnamed AAL06354.1 EscR Virulence LEE Protein 6e-21 43
lscR AAO18040.1 LscR Virulence TTSS locus Protein 9e-24 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-22 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG2338 Protein 6e-41 55
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG2016 Protein 1e-40 54
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG1259 Protein 1e-41 54
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG2494 Protein 8e-44 54
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG0519 Protein 5e-26 45
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG0827 Protein 2e-21 45
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG0715 Protein 1e-20 45
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG0044 Protein 1e-23 41
fliP YP_005785311.1 flagellar biosynthetic protein FliP VFG0394 Protein 9e-23 41