|
Name : hsdM2 (HMPREF0462_0558) Accession : YP_005785125.1 Strain : Helicobacter pylori 83 Genome accession: NC_017375 Putative virulence/resistance : Unknown Product : type I restriction-modification system Function : - COG functional category : - COG ID : - EC number : 2.1.1.72 Position : 539546 - 541297 bp Length : 1752 bp Strand : + Note : COG: COG0286; Pfam: PF02384; InterPro: IPR004546 DNA sequence : ATGAACTTTGAAAAGGCGATTATAGCTTATTTACCCCACAAACGCATGGAAAACGCAAGGAATAAAAAAATAATATTCTT TGCTATAATGAAACCTTTAAAGGGTGCGCTGACAGCGCCAAACAAAACCGCCAATCAAAACACAAAAAAGGGGCTTATTA TCATGGAAAACAAAAACACTCAAGCAAATAAATCTTCTTCATTAGAGCGCAACGAATTGCACAACACCATTTGGAAAGTG GCTAATAAATTGAGAGGCTCAGTGGATGGCTGGGATTTTAAGCAATACGTTTTTAGCATTCTTTTCTACCGCTACATTTC AGAAAACATGGCCCATTACATCAATAAGCAAGAGCGAGAGCACGATCCGAATTTTGATTACGCTTTATTAAGCGATGAAG AAGCTGAAAGTGCAAAAGAAGGCCTAATTGTTGAAAAAGGCTTTTTCATTCCGCCAAGCGCTTTATTTTGTAATGTGTTA AAAAACGCGCCCCATAACAACGATCTCAATGTAACCTTACAAAATATTTTTAACGAAATAGAAAAATCTAGCCTTGGGTT TAAATCAGAAGAAAATGTCAAAGGCTTGTTTGCGGATTTAGATGTCAATAGCAATAAATTAGGGAGCTCTCATAAAAATA GGGTTAAAAAACTGAATGAAATCCTTCAAGCCATAGGGGGCATGCAATTAGGCGATTACCAAAAAAGCGGGATTGATGTT TTTGGCGACGCTTATGAATATTTAATGACCATGTATGCGAGCAATGCCGGCAAAAGCGGAGGGGAATTTTTCACCCCCCA AGAAGTGAGCGAACTGCTCGCTAAAATCGCCCTGCACAATCAAGAAAGCGTCAATAAAGTTTATGATCCATGCTGTGGGA GCGGATCGTTACTCTTACAATTTTCTAAAGTGTTAGGCGATAAAAATGTTTCAAAAGGGTATTTTGGGCAAGAAATCAAC CTGACCACTTACAACCTTTGCCGTATCAATATGTTTTTGCATGACATCAATTACTCTAAATTCCACATAGCGCATGGGGA CACGCTTTTAGACCCAAAACATGAAGACGATGAGCCTTTTGATGCGATCGTTTCCAACCCTCCTTATTCCATTGAATGGG TGGGCGATAAAAACCCCATTTTAATCAACGATGAGCGCTTTAGCCCGGCCGGTGTGTTAGCGCCCAAAAAAACCGCCGAT CTCGCTTTCACCATGCACATGCTTTCTTATCTGTCTAATAGCGGCACTGCTGCGATCGTGGAATTCCCGGGGGTGCTTTA TAGGGGGAATGCTGAAGCAAAAATCAGAGAATATTTAGTCCAAAATAATTTCATTGACTGCGTGATCGCTTTACCAGACA ACCTCTTTTTTGGAACGAGTATCGCTACTTGTATTTTAGTGCTTAAGAAAAACAAACAAGACGACACCACGCTTTTTATT GATGCGAGTAAGGAATTTGTCAAAGAAGGCAAGAAAAACAAGCTCAAAGAACACAACCGAGAAAAGATTTTAAAAACCTA TACGGAAAGGAAAGCAATCAAGCATTTTTCTGCCCTAGCGAGTATGGAGTTAATCAAAGAAAACGATTACAACCTATCGG TGAATCGCTATGTGGAGCAAGAAGACACTAAAGAAATTATTGACATTAAAGCGCTCAATGCTGAGATTTCTCAAATCGTA GAAAGACAAAGCGCTTTAAGAAACAGCCTTGATTTTATCATCAAAGAGTTAGAAGAAGGGCAAAATGCATAA Protein sequence : MNFEKAIIAYLPHKRMENARNKKIIFFAIMKPLKGALTAPNKTANQNTKKGLIIMENKNTQANKSSSLERNELHNTIWKV ANKLRGSVDGWDFKQYVFSILFYRYISENMAHYINKQEREHDPNFDYALLSDEEAESAKEGLIVEKGFFIPPSALFCNVL KNAPHNNDLNVTLQNIFNEIEKSSLGFKSEENVKGLFADLDVNSNKLGSSHKNRVKKLNEILQAIGGMQLGDYQKSGIDV FGDAYEYLMTMYASNAGKSGGEFFTPQEVSELLAKIALHNQESVNKVYDPCCGSGSLLLQFSKVLGDKNVSKGYFGQEIN LTTYNLCRINMFLHDINYSKFHIAHGDTLLDPKHEDDEPFDAIVSNPPYSIEWVGDKNPILINDERFSPAGVLAPKKTAD LAFTMHMLSYLSNSGTAAIVEFPGVLYRGNAEAKIREYLVQNNFIDCVIALPDNLFFGTSIATCILVLKKNKQDDTTLFI DASKEFVKEGKKNKLKEHNREKILKTYTERKAIKHFSALASMELIKENDYNLSVNRYVEQEDTKEIIDIKALNAEISQIV ERQSALRNSLDFIIKELEEGQNA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0053 | YP_300143.1 | type I restriction-modification system methyltransferase subunit | Not tested | SCC15305cap | Protein | 2e-95 | 42 |
| hsdM2 | YP_186690.1 | type I restriction-modification system, M subunit | Not tested | vSa¥â | Protein | 3e-95 | 41 |
| SAMSHR1132_03780 | YP_005324900.1 | putative type I restriction enzyme modification protein | Not tested | vSa¥á | Protein | 2e-94 | 41 |
| hsdM1 | YP_185366.1 | type I restriction-modification system, M subunit | Not tested | vSa¥á | Protein | 3e-95 | 41 |
| SAR0433 | YP_039884.1 | type I restriction enzyme modification protein | Not tested | vSa¥á | Protein | 1e-94 | 41 |
| hsdM | YP_001331432.1 | type I restriction-modification system, methyltransferase subunit | Not tested | vSa¥á | Protein | 3e-95 | 41 |
| hsdM | NP_373642.1 | type I site-specific deoxyribonuclease LldI subunit HsdM | Not tested | vSa¥á | Protein | 7e-95 | 41 |
| hsdM | YP_493119.1 | type I restriction-modification system, M subunit | Not tested | vSa¥á | Protein | 3e-95 | 41 |
| SAKOR_00415 | YP_008490599.1 | Type I restriction-modification system methylation subunit | Not tested | vSa¥á | Protein | 4e-95 | 41 |
| SAS1732 | YP_043848.1 | type I restriction enzyme modification protein | Not tested | vSa¥â | Protein | 4e-95 | 41 |
| SAR1899 | YP_041281.1 | type I restriction modification system modification protein | Not tested | vSa¥â | Protein | 9e-94 | 41 |
| ORF6 | BAC22943.1 | - | Not tested | etd PI | Protein | 1e-94 | 41 |
| hsdM | NP_646568.1 | hypothetical protein | Not tested | vSa¥â | Protein | 4e-95 | 41 |
| hsdM | NP_370955.1 | type I site-specific deoxyribonuclease LldI chain | Not tested | vSa¥á | Protein | 3e-94 | 41 |
| SAV1808 | NP_372332.1 | type I restriction enzyme EcoR124II M protein | Not tested | vSa¥â | Protein | 4e-95 | 41 |
| SAS0394 | YP_042520.1 | restriction enzyme modification protein | Not tested | vSa¥á | Protein | 3e-94 | 41 |
| SA1626 | NP_374915.1 | hypothetical protein | Not tested | vSa¥â | Protein | 4e-95 | 41 |
| hsdM | NP_645209.1 | type I site-specific deoxyribonuclease LldI chain hsdM | Not tested | vSa¥á | Protein | 2e-94 | 41 |
