|
Name : HMPREF0462_1507 (HMPREF0462_1507) Accession : YP_005786073.1 Strain : Helicobacter pylori 83 Genome accession: NC_017375 Putative virulence/resistance : Unknown Product : DNA methylase Function : - COG functional category : - COG ID : - EC number : - Position : 1504994 - 1513411 bp Length : 8418 bp Strand : - Note : COG: COG4646; Pfam: PF02384,PF04851,PF00271; InterPro: IPR014001 DNA sequence : ATGCAAAAAAAGAAAGCTAAAAACCCACAACCGAATTTATTTAGCATCTTAGATAATGGCGATATTGCAACAAACAATCC TTCTGAAGAATCAGACAAGGTCAATGAAACACAAGAGCCACTCCCTTATGTCGTGAAAACTCAAATCAATACAGCAAGAA TGATTTCTAGAAATCCTATTGAATGGGCAAGGTATTTAAGCTTTGAAAGACGAGTGCATAAGGATAGTAGTAAAGAAGAT GTCAATTTCTTTGCTAATGGTGAGATAAAAGAAAGTTCTCGTGTTTATGAAGCGAATAAGGAAGGGTTTGAAAGGCGCAT AACTAAAAGATACGATCTGATTGATACCATAAGAAATAAAGAATTTTTTTCAAAAGAAATTGAAATTCTAACCTACACAA ACAGCTTAGAAGAATTGAAAGAGCAAGGTTTAGAAATCCAATTGACCCACCATAATGAAACGCATAAGAAAACCTTAGAA AATGGCAATGAGATCGCTAAAGAATACGACTATCTTAAAGATATTTACCAAGAAGTAGAAAGAACAAAAGATAATGAATT GGTAAGAGAAATAATCCCTAGTATTTCTAGCGCTGAGTATTTTAAGCTCTATGACAAACTGCCTTTTGAATCAATAAACA ATGAAAATACCAAACTGAACACTAACGACAATGAAGAAGTTAAAAAACTAGAATTTGAATTAGCTAAAGAAGTGCATACT TTAATCCTAGAGCAACAATTGCTTTCAGCAACAAATTATTATTCTTGGATAGATAAAGATGATTATGCGTCTTTTGCTTG GAAAATGCATAGGCTTATCAATGAAAATAAACTCAAAGAAAACCATCTCAGTGCAGATAACGCTAATAAGATTAAGCAAT TTTTCTTTAATAATGGTTTTATTTTAGGCTGGACTAAAGAAGAACAAAGTGCTATACAAGAAAACAGAGATTATTCTTTA AGAAGCGCTCTTTTAAGTTTGGAAGAAATCGCTCAAGCAAAAATTGAATTGCAAAAATACTATGAAAGCGTTTATGTTAA TGGTGATGGGAGTAAAAGAGAAATCAAGCCTTTCAAAGAAATTTTAAGAGACATCAACAACTTTGAAAAAGCTTATAAGG AGTGTTATAGCGAATTGGTAAGCTTGAATGAAGCAATCATTCAAGCTAAAGAGAGGAGTAATGGGCAGCAAAATTCTAAC GCAAATAACAATAACACTATTAAAAATACAATAGAGACTAATACTTCTATTGGTAACAATATTATTCAAAATAATGATAA TAATAATCCAAATTTAAGCATTGCTGATTTAGAATTAGAGCAACAAAATTTAGGAGAACAAAATGGAAAAGAAAGAACAA ATCGCGCAGATGAGCCGAATAGAACTAGAGCAGGAATTCCGCAAGAAATTCACCGCAGAAGCGAACATGGAGGATTGCAA GAGGGAGTGGAGCGATCGAGTGATGAAGAACTTTTACACCAAGACCCTAGTTTATTTATTGAGCCTAGAGAGCAGGGAGG AACAAGAGGAGTTTATAGATCTAGCGACCAACAGGCAGTTTCAGAAAAATCCCATAGAGAGAGAGATAGACTACATGAAC ATGTATCTAGAGGAGATGGAATATCAGCAAGAGCAGAAGCAAGAGCAGATAGCAATGGAACATCAAGTCAAGCAAGCCGA ATGGAAAATGGAGCAAGAAGCGAAGAAAAGGGGGATAATCCCAGCGATGAGAGAGGAGTATCACAGACACCGCAATCCCC ATCTCATCAACAAAATAGCTCCAGAAATTTGGGGCTTTCTCTCTCTAGAGAACAGCCAGGACAGACTGGACGCTTACGCC TTTTTGATCATGGACAGATGGGCTCATTATTTCCCACAGACCATGAAAACCAAAGAGAAAGGAACGATAATGAGCTTGAT AGAAGCAGTGATAGAGCAAACGAAAATGGAGACAAAAGCCCTAGACAGAATGGAAGCACAAATCAAGAGAGCACAAGGAG TGAGCGATATGGAATTGCTCAAGGAAGCTCAAATCAATCAGTATTACCACTTGCTCAAAGCCGACTACATCATGCAGGAC TTGGCACACCAAATGGACTTGGAAACCTTGAAGAAAACAGGGATCAAAAGAGAGGACTTTTATCAAATTTAGACCATTTA GAAAGCCTGCTTAACGCTATCAGAAACAACACCATAGCGAGTGAGCCTGACTTTAGATCCAGGCTCTTAGAAGCCATTCA AAACAACGAGCCTTTAAAAGATAGCCTTGTAGGGACACAACTCCTTAAAGACCCTACAACTAAAATCTTTTATGACAAAT TCCAATTAAAAATCAGCCCTAAAAAAGTCTTAGAGATTTTAGAAAATCGCATTAAAAAATCCATTGAAACAACGAATGAA ACGCTAAACGCATTCAATGCACTGGATAGTCAAGCCATTGATGGAAACGCTATTTCTAATAGTGTAGGATTAAATCCCAC ACAAGAGAATGAAATAGCAGAAAATAGCGTAGAGTTGAATAGCGTTCAAGAACAAACCGCGCAAGAGCAAGACACGCAAG AAAACGCACAAACCACGATAAAACAAGAAACACCAACCGCACCAGCCATCCCCCTTAATCCTAAAATAGATTTTAAACCG AGCGAAGAAGTTTTAATCAAGGGAGCTAAAACTCGCTATAAGGCTAACATAAAAGCCATTGAGCTTTTAAAAGAATTGCA AGCCAAACAAGAGATCTTAAAAGGCGATTATTACGCCACTCAAGAAGAGCAAGAAATCCTATCGCAATTTAGCGGATGGG GTGGGTTAGAAAGCTACTTTAAAAAGGATCAACGCCCTGAAGAATTTAAAGAATTAAACGCTTTACTCACTAAAGATGAA TTCAGAAGAGCTTATTCAAGCACAAGAGACGCTTACTACACCCCTAAATTAGTTATTGATAGCATTTATCATGGTTTAGA TCAATTAGGGTTCAATAACGACAACCATCAAAAAGAAATCTTTGAACCCAGTTTAGGCACAGGCAAATTCATCGCTCATG CGCCAAGCGATAAGAATTACCGCTTTATGGGAACAGAATTAGATCCTATTAGCGCTAATATTTCTAAATTCCTTTACCCT AATCAAGTCATCCAAAACACCGCTTTAGAAAACCACCAATTCTATCAAGAATACGATGCGTTTGTGGGCAATCCTCCTTA TGGCAATCATAAAATCTATAGCTCCAATGACAAAGAATTGAGTAACGAGAGCGTTCATAATTACTTTTTAGGGAAAGCTA TCAAAGAATTGAAAGATGATGGTATAGGGGCGTTTGTGGTGAGTTCTTGGTTTATGGATAGTAAAAACCCTAAAATGAGA GAACACATCGCGCAAAACGCCACTTTTTTAGGAGCGATAAGATTGCCTAATAGCGTGTTTAAAGCAACAGGCGCTGAAGT GAGTAGCGACATTGTGTTTTTTAAAAAAGGCGTTGATGAAGCAACCAATCAAAGCTTCACTAAAGCTATGCCTTATTATG ATAAGATTATTGATAGCTTGGATGATGACACCCTTTTTGCCTTGCAAAACAACCGCTTTGATAGTTTCATTCCTAGCGAT CAACTTAAGATTGTCAATGCGATTGCAAGCCATTTTGGTTTCAAACAAGAAAAATTGCAACGCTGGTATGAAAAAATAGA CACCGCTAACTTTGGCTACAAAGAACAAGACTATAAGATCATCAAAGACTTCATTGATAAAGTTGGTGAGAATAATATCA ATCTCAACGAACAAACCTTGAATGAATACTTTATCCACCACCCTGAAAACATTCTAGGGCATTTGAGTTTGGAAAAAACC CGCTATAGCTTTGAAATAAATGGCGAACAAATTTACAAATACGAGTTGCAAGCTTTAGAGGATAAAAGCCTAGATTTATC CCAAGCTCTTAATCAAGCGATAGAAAAATTGCCTAAAGGCGTCTATCAATACCATAAGACTACCCTTAAAACAGACGCTC TTATCATTGATGCAAATAACGAACGCCATGAAGAAGTTCAAAAGCTTATCAAAAATTTAGAAAGGGGGGAATTAGTCAAG TGGGATAATCTTTATTTCCAACTGGAACAAAATAATGAAATAGGCATCTTTTTAAAACCCACTAAAACCAACTCTAAAGT CCAAGATTCACGACTAAAAGCCTATTTTAAAATTAAAGACGCTTTGAATGATTTAACGAGCGCGGAATTAAGCCCCTTAA GCTCTGATTTGGAGCTAGAAAGTAAAAGGGTTAGGCTCAATCTTGTTTATGATGAATTTGTCAAGAAATTTGGCTATCTC AATGAGAATAAAAATCGTAAGGACATCAAACAAGATTTGTATGGCGCTAAAGTCTTAGGATTAGAAAAAGACTTTGAAAA AGAAATCACCCCTAGAAGCGCTAAAATGCAAAACATAGAGCCAAGGCAAGCTCAAGCTAAAAAAGCTCAAATCTTTTTTG AAAGGACTTTAAACCCTAAAAAAGAACTTATTATCACTAACGCTAAAGAGGCACTAATTGCAAGCATCAATCAAAAAGGG GGTTTGGACTTGCATTTCATTAGAGATCATTTCACAACCCAAAGCTTAGAAACCACGATTAAAGAACTTTTAGAGCAAAA ACTTATTTATAAAGACCACAAGGATAATGGCGGCTATGTTTTAGCGAACGATTATTTGAGTGGCAATGTGAAAAGAAAAC TCAAAGAAGTTAAAGAAGCCATCAATCAAGGCGTGGAGGGATTAGAGGCTAATGTGAAAGATTTAGAGCTGATTATCCCT AAAGATTTGAAAGCCACTGAAATCATGGCTAATACCAACAGCCCTTGGATACCCACTCAGTATTTAGAAGAGTTTTTAAT AGAATTAGCCGCTAACCATTATGAAAAGCAATACGGCGATAAAATGACAGATTACCAACTAGGCAATCTCAAAGAAGACA TCAAAGTAGAACACCTAAGCGGTGCTTATGAAGTTTTTGCTAGAAACAATGAATTGAACGAGCTTTATGGTATCAGGCAT AAAGACAAAGCGCATTCTTATAAAGTGCCTTTTGAAAGCCTTTTAAATAAAATCTTAAACAACAAGGATTTGAGCGTTAA ATACGCCCAAGTTGATCCCAATGACCCTAAAAAAGAAATCTTTATCACTGATGAAGAGCAAAGCAATCTCGCTAGACAAA AAGCAGAAGAATTGAAAGAAGCTTTTAAAGACTGGATTTATAAAGATTATTCAAGAAGAACCCATTTAGAGCAAATCTAT AATGACACTTTCAACAATTCTGTTTTAAAAACCTATGATGGCTCGCAATTAGAACTAGAGGGCTTTAACCACCATATCAG CTTGCGCCCCCACCAAAAGAACGCTATTTTTAGAACCATCCAAGACAGGGCGGTGTGTTTAGACCATCAGGTTGGAGCAG GCAAGACTTTGTGCGCTATAGCCAGTTGCATGGAACAAAAACGCATGGGATTAGTGAATAAAACGCTCATTGCCGTGCCT AACCATTTAACCAAGCAATGGGGCGATGAATTTTATAAGGCTTACCCTAACGCTAATGTGTTAGTTGATGATAGCAAGGA CATCACTGAAAAAGAAAGAGAGCTTTTATTCAATCAAATCGCTAACAACAATTATGACGCTGTGATTATCGCGCACACCC ATTTGGAATTGTTGTCTAACCCTAGAGGAATCATAGAAGAATTGAAAGAAGAAGAGCTAGTGAATGCCGAAAAAAACCTT GAAAGGCAAGAATTAGCTTATAAAAATAACCCTAGAGAAACTAAAAAACCCAATGAAAGAGCCTTTAAAAACAAGCTGGA TAAAATCCGTGCTAAATACGATGCGATTTTAGAAAAACAAGGCTCTCATATTGATATTAGTCAAATGGGGATTGACAATT TGATTGTGGATGAAGCCCACTTATTCAAAAATCTAGCCTTTGAAACTTCTATGGAAAAAATTGCAGGGCTTGGTAACCAA CAAGGCTCTAATCGTGCCAGAGATTTATTCATTAAAACACGCTACTTGCATCAAAACGATAAGAAAATCATGTTTTTAAC CGGCACGCCTATAGCTAATTCCTTGAGTGAAATGTATCACTTGCAACGCTACCTGACCCCTGATGTGTTGAAAGAAAGAG GGTTAGAATTCTTTGATGATTGGGCTAAGACTTATGGGGAAGTGGTGAATGATTTTGAATTAGACACTTCCGCTCAAAGT TATAAAATGGTTAATCGCTTTTCTAAATTTAGCGATGTGCAAGGCTTAAGCGCCATGTATAGAGCTTTTGCGGATATTGT CTCCAATGATGATATTTTAAAGCATAACCCCCACTTTGTGCCTAAAGTGTATGGGGATAAACCTATCAATGTGGTGGTGA AAAGAAGCGAAGAAGTGGCTCAATTTATTGGCGTGGCTTTAGAAAATGGCAAATATAATGAAGGCTCTATCATTGATAGG ATGCAAAAATGCGAAGGCAAGAAAAGCAAAAAAGGGCAAGACAATATCCTTTCTTGCACCACAGACGCTAGAAAAGTGGC TTTGGATTACCGCTTGATTGACCCTAACGCTAAAGTAGAAAAAGAATTTTCTAAAAGCTATGCTATGGCAAAAAATATCT ATGAGAATTATTTAGAAACTAATGCCACTAAAGGCACACAACTTGGTTTCATAGGTCTATCCACACCCAAAACCCATAGC CAAAAAGTGAGTTTAGAAGCTCCAGATAACGCTCATGAGATAGAAAATAAAAATCCCCTAGATGAAGCTCAAGAACTTTT AGAGAGCTTGTCTAGTTATGATGAAAATGGCAATCTTATCGCTCCTAGCAAGAAAGAATTAGAGAACGAACTCAAAGAGA AAGAGGCTAAAAGCGTCAATTTAGATGAAGAGCTCGCTAAAGGCTGTAAGTTTGATGTTTATAGCGATGTTTTAAGGCAT TTAGTCCAAATGGGTATCCCACAAAATGAAATCGCTTTCATCCATGACGCTAAAACCGAAGAACAAAAGCAGGATTTGTT TAAAAAGCTCAATCGTGGCGAAGTTAGGGTATTATTGGGCAGTCTTGCTAAAATGGGCGTAGGCACTAATGTGCAAGAGA GATTAGTCGCTATGCATGAATTAGATTGCCCATGGAGACCTGATGAATTGTTGCAAATGGAAGGGCGTGGGATAAGACAA GGCAATATTTTGCACCAAAACGATCCTGAAAATTTTAGAATGAAAATCTATCGCTACGCCACTGAAAAAACTTATGATAG CCGTATGTGGCAAATCATAGAGACTAAATCTAAAGGCATAGAGCAATTTAGAAACGCGCACAAATTAGGCTTGAATGAAT TAGAAGACTTTAATATGGGGAGTTCTAATGCGAGTGAGATGAAAGCAGAAGCGACAGGTAATCCCTTAATTATTGAAGAA GTCAAATTGAGAGCTGAAATCAAAAACGAAGAAGCAAAATACAAAGCTTTCAATAAAGAAAATTACTTCAATGAAGAGAA TTTGAAAAGCAACTCTTCTAGATTGGATTATCTTAAACAGGAATTGAAAGATTTAGAAACGCTTTCAAGCTCTATAATAA TCCCCACTCATACAGAGATCAAGCTCTATGATTTGAAAAATGAAGAGAGTAAGGATTATGAGCTTATCAAAGTTAAAGAA GTAGAGCCTTTAAAAGAAAACGCCTCTATGAGTGAAGAATTAACGCACAAAAAACTCAAAGAACAAAACAAGCAAATAGC CGAACAAAATAAAGAAAAGCTAGACGCTATTAAAAAGCAATTTGCAAGCAATTTGAACGACTTATTTTTCAATGAGGAAA GAGATTGTAAGTTTTTAGAATACAAGGGCTTTGTGGTGAATGCTTATAAAACTAAGTATCAAGTGGAGTTTAGTTTAAGC CCTAAAGACAATCCAAATGTTGCCTATAGCCCTAGCAATATGGTTTATAAAAACGATACTGCCAACATGTTTAGCCCTTA TAATTTCTGCGGTGAGATTAAATTTGATGGGTTTTTAAAAAGACTGGATAACGCTATCACTAAACTCCCTGAAAAAATCA AGGAATTAGAAAACTCCCTTAAAACCACTCAAGAAAATATCGCTAAATACACAAGATTAGTGGAACAAAAACCTCCTTAC TCACGACTAGAATACTTGCAAGCTTTAAAATGGGATCATAAAACTCTAATAGATGATTTAGCTAAAATGAGCAAAAACAG AGATTATAAGCCTGTGTTCAATCCTAAATCTCAAGAAGTCTTAGAGAAAATGAACGCTGAAAAAAGAGCGAGTTTAGAGA ATGAGAGTGTAACAGAAGAGATAAAAGAACAAGCCAACCAAGAAGCGCATAGACCAATGAAAAAAGCATCTGGTGGTGAT TACGACATGGGGATGTGA Protein sequence : MQKKKAKNPQPNLFSILDNGDIATNNPSEESDKVNETQEPLPYVVKTQINTARMISRNPIEWARYLSFERRVHKDSSKED VNFFANGEIKESSRVYEANKEGFERRITKRYDLIDTIRNKEFFSKEIEILTYTNSLEELKEQGLEIQLTHHNETHKKTLE NGNEIAKEYDYLKDIYQEVERTKDNELVREIIPSISSAEYFKLYDKLPFESINNENTKLNTNDNEEVKKLEFELAKEVHT LILEQQLLSATNYYSWIDKDDYASFAWKMHRLINENKLKENHLSADNANKIKQFFFNNGFILGWTKEEQSAIQENRDYSL RSALLSLEEIAQAKIELQKYYESVYVNGDGSKREIKPFKEILRDINNFEKAYKECYSELVSLNEAIIQAKERSNGQQNSN ANNNNTIKNTIETNTSIGNNIIQNNDNNNPNLSIADLELEQQNLGEQNGKERTNRADEPNRTRAGIPQEIHRRSEHGGLQ EGVERSSDEELLHQDPSLFIEPREQGGTRGVYRSSDQQAVSEKSHRERDRLHEHVSRGDGISARAEARADSNGTSSQASR MENGARSEEKGDNPSDERGVSQTPQSPSHQQNSSRNLGLSLSREQPGQTGRLRLFDHGQMGSLFPTDHENQRERNDNELD RSSDRANENGDKSPRQNGSTNQESTRSERYGIAQGSSNQSVLPLAQSRLHHAGLGTPNGLGNLEENRDQKRGLLSNLDHL ESLLNAIRNNTIASEPDFRSRLLEAIQNNEPLKDSLVGTQLLKDPTTKIFYDKFQLKISPKKVLEILENRIKKSIETTNE TLNAFNALDSQAIDGNAISNSVGLNPTQENEIAENSVELNSVQEQTAQEQDTQENAQTTIKQETPTAPAIPLNPKIDFKP SEEVLIKGAKTRYKANIKAIELLKELQAKQEILKGDYYATQEEQEILSQFSGWGGLESYFKKDQRPEEFKELNALLTKDE FRRAYSSTRDAYYTPKLVIDSIYHGLDQLGFNNDNHQKEIFEPSLGTGKFIAHAPSDKNYRFMGTELDPISANISKFLYP NQVIQNTALENHQFYQEYDAFVGNPPYGNHKIYSSNDKELSNESVHNYFLGKAIKELKDDGIGAFVVSSWFMDSKNPKMR EHIAQNATFLGAIRLPNSVFKATGAEVSSDIVFFKKGVDEATNQSFTKAMPYYDKIIDSLDDDTLFALQNNRFDSFIPSD QLKIVNAIASHFGFKQEKLQRWYEKIDTANFGYKEQDYKIIKDFIDKVGENNINLNEQTLNEYFIHHPENILGHLSLEKT RYSFEINGEQIYKYELQALEDKSLDLSQALNQAIEKLPKGVYQYHKTTLKTDALIIDANNERHEEVQKLIKNLERGELVK WDNLYFQLEQNNEIGIFLKPTKTNSKVQDSRLKAYFKIKDALNDLTSAELSPLSSDLELESKRVRLNLVYDEFVKKFGYL NENKNRKDIKQDLYGAKVLGLEKDFEKEITPRSAKMQNIEPRQAQAKKAQIFFERTLNPKKELIITNAKEALIASINQKG GLDLHFIRDHFTTQSLETTIKELLEQKLIYKDHKDNGGYVLANDYLSGNVKRKLKEVKEAINQGVEGLEANVKDLELIIP KDLKATEIMANTNSPWIPTQYLEEFLIELAANHYEKQYGDKMTDYQLGNLKEDIKVEHLSGAYEVFARNNELNELYGIRH KDKAHSYKVPFESLLNKILNNKDLSVKYAQVDPNDPKKEIFITDEEQSNLARQKAEELKEAFKDWIYKDYSRRTHLEQIY NDTFNNSVLKTYDGSQLELEGFNHHISLRPHQKNAIFRTIQDRAVCLDHQVGAGKTLCAIASCMEQKRMGLVNKTLIAVP NHLTKQWGDEFYKAYPNANVLVDDSKDITEKERELLFNQIANNNYDAVIIAHTHLELLSNPRGIIEELKEEELVNAEKNL ERQELAYKNNPRETKKPNERAFKNKLDKIRAKYDAILEKQGSHIDISQMGIDNLIVDEAHLFKNLAFETSMEKIAGLGNQ QGSNRARDLFIKTRYLHQNDKKIMFLTGTPIANSLSEMYHLQRYLTPDVLKERGLEFFDDWAKTYGEVVNDFELDTSAQS YKMVNRFSKFSDVQGLSAMYRAFADIVSNDDILKHNPHFVPKVYGDKPINVVVKRSEEVAQFIGVALENGKYNEGSIIDR MQKCEGKKSKKGQDNILSCTTDARKVALDYRLIDPNAKVEKEFSKSYAMAKNIYENYLETNATKGTQLGFIGLSTPKTHS QKVSLEAPDNAHEIENKNPLDEAQELLESLSSYDENGNLIAPSKKELENELKEKEAKSVNLDEELAKGCKFDVYSDVLRH LVQMGIPQNEIAFIHDAKTEEQKQDLFKKLNRGEVRVLLGSLAKMGVGTNVQERLVAMHELDCPWRPDELLQMEGRGIRQ GNILHQNDPENFRMKIYRYATEKTYDSRMWQIIETKSKGIEQFRNAHKLGLNELEDFNMGSSNASEMKAEATGNPLIIEE VKLRAEIKNEEAKYKAFNKENYFNEENLKSNSSRLDYLKQELKDLETLSSSIIIPTHTEIKLYDLKNEESKDYELIKVKE VEPLKENASMSEELTHKKLKEQNKQIAEQNKEKLDAIKKQFASNLNDLFFNEERDCKFLEYKGFVVNAYKTKYQVEFSLS PKDNPNVAYSPSNMVYKNDTANMFSPYNFCGEIKFDGFLKRLDNAITKLPEKIKELENSLKTTQENIAKYTRLVEQKPPY SRLEYLQALKWDHKTLIDDLAKMSKNRDYKPVFNPKSQEVLEKMNAEKRASLENESVTEEIKEQANQEAHRPMKKASGGD YDMGM |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HPP12_0447 | YP_002301083.1 | DNA methylase | Not tested | cag PAI | Protein | 0.0 | 93 |
