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Name : lysS (hp2017_0188) Accession : YP_005783164.1 Strain : Helicobacter pylori 2017 Genome accession: NC_017374 Putative virulence/resistance : Virulence Product : Lysyl-tRNA synthetase class II Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 179714 - 181219 bp Length : 1506 bp Strand : + Note : - DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAATAGCTTGAGAGAAGAAGGCAAAAACCCTTATAAAAA TGGCTTGAAACGGAGCCTCACCAACGCCGCTTTTTTAGAAAAATACGCTTACGTTAAGGATTTAGAAGAGCCTAAAGACA AAGAAAAATGCGAGAGCGTTGTAGGGAGGGTCAAGCTTTTGCGTTTAATGGGTAAGGCATGTTTTATTAAGATTGAAGAT GAAAGCGCGATTTTACAAGCTTATGTTTCGCAAAATGAATTGAACGATGAGTTTAAAAGCTTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTAAGCGTTCATGCCATAGAATTTTACA TTTTAAGCAAAACCATCGTGCCTTTGCCTGAGAAATTTCATGGACTGAGCGATATAGAATTGCGTTACCGCCAACGCTAC TTGGATTTGATCGTCAATCCTGGCGTTAAAGACGTGTTTAAAAAGCGCAGTTTGATTGTCTCTAGCGTGCGGAAATTTTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCTATGATGCACCCCATTCCTGGTGGGGCGAATGCAAGGCCCTTCATCA CTTATCATAACGCTTTAGAAATTGAAAGGTATTTGAGAATCGCCCCAGAATTATACCTTAAACGCTTGATTGTGGGGGGT TTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGGAATGAGGGCATGGATCACAGCCATAACCCCGAATTCACGATGAT TGAATTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGCTGTTTGACTACTTGCTAAAGACTT TAAATTTAGATTCAAAAATCATCTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCTTATTTGGACGCT TTGGAAACAATAGGGGGCATTAGTAAGGGCATTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCGAGGCGT TAAAGTAGAGCCAAACCTCACTCATGGCAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAACATAAGCTCATTAACC CCACTTTTGTAACCGAATATCCCATTGAGATTAGCCCTTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCAGGTAAAGAAATCGCTAATGGCTTTAGCGAGTTGAATGACCCTTTAGATCAACTAGAGCGCTT TAAAAATCAAGTGGCTGAAAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTACGTGTGGGCCCTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGCTGCTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTTGAGGGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKCESVVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHAIEFYILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPGVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISKGILEKEDRLLAYLLERGVKVEPNLTHGKLLAEAFDHFVEHKLINPTFVTEYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVEGEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 3e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005783164.1 | Lysyl-tRNA synthetase class II | VFG1668 | Protein | 2e-105 | 50 |
