Gene Information

Name : HPIN_04290 (HPIN_04290)
Accession : YP_005782167.1
Strain : Helicobacter pylori India7
Genome accession: NC_017372
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein 3
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 872000 - 873439 bp
Length : 1440 bp
Strand : -
Note : -

DNA sequence : 
ATGTTTAGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAACACTCTTTATGCTAAAGAAATAAGTGA
AGCCGATAAGGTCATTAAGGCCACTAAAGAAACTAAAGAGACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCTAAAC
AGCGCCAACAGATCCCTGATCATAAGAAACCTCAATATGCCTCTGTTGATGACACAAAAACTCAAGCGCTTTTTGATATA
TACGACACCTTGAACGTGAATGATAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTATTGGATTACAACAACTATTTATCCATAGAAAACCCCATTATCAAAACAAGAGCAATGGGGACTTATG
CGGATCTCATCATCATCACAGGTTCATTAGAACAAGTCAATGGGTATTACAATATTTTAAAGGCACTCAACAAACGAAAC
GCTAAGTTTGTGTTAAAAATCAATGAGGACATGCCTTATGCCCAAGCGACTTTTTTGAGAGTGCCAAAAAGAAGCGATCC
CAATGCCCACACGCTTGATAAGGGAGCGTCAATTGATGAGAACAAGCTTTTTGAACAACAAAAACGCGCGTATTTCAACT
ACGCCAACGATGTGATCTGCAGACCCAATGATGAAGTGTGTTCGCCCCTAAGAGATGAGATGGTCGCTATGCCCACTAGC
GATAGCGTTACTCAAAAACCCAATATCATTGCTCCTTATAGCCTATATAAACTAAAAGAGACAAATAACGCCAATGAGGC
CCAACCATCAGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGTTAATCGCTAACTCCCAACTCA
TAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTGGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATACAAGCTC
AAAGACTTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGTAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAGAGTAGT
GGAAGTGCCTATTTCTCCTAAAACAGGTAATTCTTTTGAAACAATGAGAGTTGTCAAAGAAAAAGAAAACTATAATGGAT
TATTAGTGGATAAAGAAACCACGATCAAAAGAAGCTATGAGGGGACTTTGATTAGCGAAAATTCTTACAGCAAAAAATCG
CCCATCAACCCTAATGACTTGAGAAACTTAGAAGAAGAAATCAAAAGCTACTATATCAAGTCTAATGGTTTGTGTTATGC
TAATGGCATCAGTCTTTATGTAAAAATCAAAAACGACCCCTATAAAGAGGGAATGCTGTGTGGTTATGAGAGCGTTCAAA
CTTTACTTTTGCCATTAAAGGACAAGCTCAAATACGACAAGCAAAAGTTACAAAAAGCGTTACTGAAAGATTCAAAGTAA

Protein sequence : 
MFRKLATAVSLIGLLTSNTLYAKEISEADKVIKATKETKETKKEAKRLKKEAKQRQQIPDHKKPQYASVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINEDMPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTS
DSVTQKPNIIAPYSLYKLKETNNANEAQPSATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKYKL
KDLENQKKLKALEVELKKKNAKKPRVVEVPISPKTGNSFETMRVVKEKENYNGLLVDKETTIKRSYEGTLISENSYSKKS
PINPNDLRNLEEEIKSYYIKSNGLCYANGISLYVKIKNDPYKEGMLCGYESVQTLLLPLKDKLKYDKQKLQKALLKDSK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-164 98
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 1e-164 98
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 4e-166 98
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-165 97
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-165 97
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-163 97
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-163 97
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 9e-164 97
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 9e-164 97
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-162 97
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-162 97
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-163 96
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-163 96
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 96
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 4e-163 96
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 96
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 96
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-163 96
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 2e-162 96
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 1e-162 96
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-163 96
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 9e-163 96
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-163 96
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 4e-159 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPIN_04290 YP_005782167.1 cag pathogenicity island protein 3 VFG0282 Protein 2e-163 96