Gene Information

Name : HPIN_04285 (HPIN_04285)
Accession : YP_005782166.1
Strain : Helicobacter pylori India7
Genome accession: NC_017372
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein gamma
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 871478 - 871855 bp
Length : 378 bp
Strand : -
Note : -

DNA sequence : 
ATGTGCAGAACGCTCATTTCTATCGCTTTATTAGAAAGTTCTTTGGGCTTGAACAACAAGCGCGAAATTTCCCTAAAAGA
CACTTCTTATTCCATGTTTCATATCACTTTGAACACCGCTAAAAAATTCTATCCCACTTATTCTAAAACGCTCCTCAAGT
TCAAATTGCTCAATGATGTGGATTTTGCGATTCAATTAGCCAAACAAATTTTGAAAGAAAATTTTGACTACTACAAACAG
AAATATCCCAACAAAAGCGTGTATCAATTAGTAGAAATGGCAATAGGCGCTTACAATGGAGGAATGAAACACAACCCTAA
TGGCGCTTATGTGAAGAAATTCCGTTGCATTTATTCTCAAGTGCGATATAACGAGTAG

Protein sequence : 
MCRTLISIALLESSLGLNNKREISLKDTSYSMFHITLNTAKKFYPTYSKTLLKFKLLNDVDFAIQLAKQILKENFDYYKQ
KYPNKSVYQLVEMAIGAYNGGMKHNPNGAYVKKFRCIYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 7e-53 99
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 9e-53 99
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-53 99
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-53 97
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 5e-51 97
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 4e-52 97
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-53 97
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 1e-51 97
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 1e-51 97
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-51 96
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 3e-51 96
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-51 96
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-51 96
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 1e-51 96
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 6e-51 95
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 8e-51 95
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 8e-51 95
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-51 95
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-51 95
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 1e-49 95
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-51 95
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-50 93
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-50 93
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 6e-50 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPIN_04285 YP_005782166.1 cag pathogenicity island protein gamma VFG0283 Protein 3e-52 97