Gene Information

Name : HPIN_04235 (HPIN_04235)
Accession : YP_005782158.1
Strain : Helicobacter pylori India7
Genome accession: NC_017372
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagU, cag11)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 857040 - 857690 bp
Length : 651 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCGATACAACAGAGCATCATGGATCCAATTCGCTAAACGCCCCATTACCTAGCAACTCACAGAGCAATGATCTTTT
AAATTTGCTAGACTCGTTATATCCCAAAGGGAGTTTAGGGGAGCAAAGATTTCACGAAGCTCTAAAGAATCAAGAAGAGT
TGAAAAATATCCTAATAGAAATAGAAAAGCTACCGCAAGAAAAAAGGTATGAACTTCTGATGCAGATAGGACAAGCTAAA
CAGAGAATAATGGAAGCATACGCTCATTCATTCTTAGGATATATAGGGGGACTAGAGCATCTGTTAGGATTATGTATGGG
TGGGATATTTGTTTTGTTTGCAATCTATTTTGTATTTTTAAGAACTAGCAAAAACACGGATCTGGTGGAAAGTCTAAAAA
CAAAACTAAAACTTCAGTATTTTTACTATGCCTTTGGTGTAGGTGCGGTTTTGTTTTTTGGATTAGAAACAATTAGATCT
ATTTATGAACTATATATATTAGGAATTGGTAGCACTAACGACAAGGTGTTCTTTGTTTTGAAAAACATTTGTTTTATAGG
TATGGGCTATTTGATTTATAAAGTTATTAAGGTTATTGGTATAAAAAATTTTATCAATAGTCTTTTCACTTCAAAGAAAC
AAGAGCAATAA

Protein sequence : 
MSDTTEHHGSNSLNAPLPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAK
QRIMEAYAHSFLGYIGGLEHLLGLCMGGIFVLFAIYFVFLRTSKNTDLVESLKTKLKLQYFYYAFGVGAVLFFGLETIRS
IYELYILGIGSTNDKVFFVLKNICFIGMGYLIYKVIKVIGIKNFINSLFTSKKQEQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag-U AAF80202.1 Cag-U Virulence cag PAI Protein 2e-76 98
cagU YP_005779059.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 98
HP0531 BAD13947.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 98
cagU YP_005774538.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 98
cag11 AAR03866.1 Cag11 Virulence cag PAI Protein 1e-76 98
HP0531 BAD13864.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 98
cag11 AAR03924.1 Cag11 Virulence cag PAI Protein 9e-77 98
HP0531 BAD13837.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 98
HP0531 BAD13892.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-75 98
HP0531 BAD13783.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 98
HP0531 BAD13810.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-75 98
HP0531 BAD14056.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 98
HP0531 BAD14002.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-76 98
cagU YP_005775734.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-76 98
cag11 AAR03894.1 Cag11 Virulence cag PAI Protein 4e-76 97
HP0531 BAD14030.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 97
cagU YP_003728733.1 cag pathogenicity island protein U Virulence cag PAI Protein 3e-76 97
HP0531 BAD13974.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-76 97
cagU YP_005777275.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-75 97
cagU AGC69798.1 cag pathogenicity island protein U Virulence cag PAI Protein 2e-76 97
orf18 NP_223198.1 cag island protein Virulence cag PAI Protein 7e-76 97
cag11 AAR03955.1 Cag11 Virulence cag PAI Protein 6e-76 96
HP0531 BAD13919.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-75 96
HP0531 NP_207327.1 cag pathogenicity island protein (cag11) Virulence cag PAI Protein 2e-75 96

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPIN_04235 YP_005782158.1 cag pathogenicity island protein (cagU, cag11) VFG0291 Protein 7e-76 96