Gene Information

Name : HPIN_04195 (HPIN_04195)
Accession : YP_005782150.1
Strain : Helicobacter pylori India7
Genome accession: NC_017372
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cag17)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 850481 - 851401 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTCTTTAGTTATTTATGGGGGTTTAAACGCTATCAATAC
AGCATTATTGCCGAGTGAATACAAAAAATTAGTGGCTTTGGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
ACGAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAGCACAAAGG
ATTACAAGAATTAAACGAAATTAACGCTACCCCTTTGAATGACAACCCTAATAGCAATTCTTCCGCTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGGAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACCCCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCGTGT
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAATTTGGAGC
TACTGATACAAAAGAAAACGAAGCCAAAGATACAACGTTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKKLVALGFKKIKTFHQRHDDEEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNEINATPLNDNPNSNSSAETKSNKDDNFDEMINKVNGAFVKPAAPLVPD
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDTTFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-127 98
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 3e-129 98
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 7e-128 98
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 1e-126 97
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 7e-128 97
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-121 96
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-125 96
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-122 96
cagN AAF80207.2 CagN Virulence cag PAI Protein 7e-126 96
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-122 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-126 96
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-126 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-122 96
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-126 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-122 96
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-123 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 1e-124 96
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-124 95
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-121 95
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-120 95
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-121 95
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 8e-126 95
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-120 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 1e-123 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPIN_04195 YP_005782150.1 cag pathogenicity island protein (cag17) VFG0297 Protein 1e-129 98