Gene Information

Name : HPIN_04155 (HPIN_04155)
Accession : YP_005782142.1
Strain : Helicobacter pylori India7
Genome accession: NC_017372
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein C
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 842180 - 842527 bp
Length : 348 bp
Strand : +
Note : -

DNA sequence : 
ATGAGATTTCTTACAAGAATCACTGACAGCTACAAGAAAGTTGTAGTAACTTTAGGGCTAGTGGTAACAACCAATCCTTT
AATGGCGGTCACTAGTCCTGCAACAGGCATCACTGAAACTAAAGTTTTGGTGATTCAGATCATTTCTGTTCTAGCGATCG
TGGGTGGTTGCGCTCTAGGGGTCAAAGGCATAGCGGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAGGCGACT
GTTTTTGCTTACGCGCAACCCATAGCTATGTTAGCGGTGGCAGGCGGTATTATCTTTTTGAGCACTAAGTTTGGCTTCAA
TATTGGCGAGAGTGGAGGAACTAACTAA

Protein sequence : 
MRFLTRITDSYKKVVVTLGLVVTTNPLMAVTSPATGITETKVLVIQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIFLSTKFGFNIGESGGTN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagC YP_003728718.1 cag pathogenicity island protein C Virulence cag PAI Protein 7e-35 95
cag25 AAR03969.1 Cag25 Virulence cag PAI Protein 3e-39 95
HP0546 BAD13907.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-41 94
HP0546 BAD14017.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-41 94
HP0546 NP_207342.1 cag pathogenicity island protein (cag25) Virulence cag PAI Protein 4e-39 94
cagC AGC69805.1 cag pathogenicity island protein C Virulence cag PAI Protein 4e-40 94
HP0546 BAD13934.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-40 94
cagC NP_223212.1 cag island protein Virulence cag PAI Protein 2e-39 94
cagC YP_005779047.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-41 93
cag25 AAR03938.1 Cag25 Virulence cag PAI Protein 3e-39 93
HP0546 BAD14071.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-41 93
cag25 AAR03908.1 Cag25 Virulence cag PAI Protein 3e-39 93
HP0546 BAD13798.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-41 93
cagC YP_005774525.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-40 93
cag25 AAR03880.1 Cag25 Virulence cag PAI Protein 7e-40 92
HP0546 BAD13879.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-40 91
cagC YP_005775746.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-39 91
cagC AAC44704.1 CagC Virulence cag PAI Protein 3e-38 90
HP0546 BAD13825.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-38 90
HP0546 BAD13852.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-39 90
HP0546 BAD13989.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-38 89
HP0546 BAD14044.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-40 89
cagC YP_005777287.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-39 89
HP0546 BAD13962.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-39 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPIN_04155 YP_005782142.1 cag pathogenicity island protein C VFG0305 Protein 1e-39 94