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Name : HPGAM_04500 (HPGAM_04500) Accession : YP_005780600.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Unknown Product : catalase Function : - COG functional category : - COG ID : - EC number : - Position : 907475 - 908992 bp Length : 1518 bp Strand : - Note : COG0753 Catalase DNA sequence : ATGGTTAATAAAGATGTGAAACAAACCACTGCTTTTGGCGCTCCCGTTTGGGATGACAACAATGTGATTACGGCCGGCCC TAGAGGTCCTGTTTTATTACAAAGCACTTGGTTTTTGGAAAAGTTAGCGGCGTTTGACAGAGAAAGGATCCCTGAAAGGG TCGTGCATGCTAAAGGAAGCGGAGCTTATGGCACTTTCACTGTGACTAAAGACATCACTAAATACACTAAAGCGAAAATT TTCTCTAAAGTGGGCAAAAAAACCGAATGCTTTTTCAGATTTTCCACTGTGGCTGGTGAAAGAGGCAGCGCGGATGCGGT GAGAGACCCTAGAGGTTTTGCGATGAAGTATTACACTGAAGAAGGTAACTGGGATTTAGTAGGGAACAACACGCCTGTTT TCTTTATCCGTGATGGGATCAAATTCCCTGATTTCATCCACACTCAAAAACGAGATCCTCAAACCAATTTGCCTAACCAT GACATGGTATGGGATTTTTGGAGCAATGTCCCTGAAAGCTTGTATCAAGTAACATGGGTTATGAGCGATAGAGGTATCCC TAAATCTTTCCGCCACATGGATGGTTTTGGCAGCCACACTTTTAGTCTTATCAACGCTAAAGGCGAACGCTTTTGGGTGA AATTCCACTTTGAAACCATGCAAGGCGTTAAGCACTTGACTAATGAAGAAGCCGCAGAAATCAGAAAATACGATCCGGAT TCCAATCAAAGGGATTTATTCAATGCGATCGCTAGAGGGGATTTCCCAAAATGGAAATTAAGCATTCAAGTGATGCCAGA AGAGGACGCTAAGAAGTATCGATTCCATCCGTTTGATGTGACTAAAATTTGGTATCTCCAAGATTATCCGTTAATGGAAG TGGGCATTGTAGAGTTGAATAAAAATCCTGAAAACTATTTCGCAGAAGTGGAGCAAGCGGCATTCAGTCCGGCTAATGTC GTTCCTGGAATTGGCTATAGCCCTGATAGGATGTTACAAGCCCGCTTGTTCTCTTATGGGGACACACACCGCTACCGCTT AGGGGTTAATTATCCTCAGATACCGGTTAACAGACCAAGATGCCCATTCCACTCTTCTAGCAGAGATGGTTACATGCAAA ATGGATACTATGGCTCTTTACAAAACTATACGCCTAGCTCATTGCCTGGTTATAAAGAAGATAAGAGCGCTAGGGATCCT AAGTTCAACTTGGCTCATATTGAAAAAGAGTTTGAAGTGTGGAATTGGGATTACAGAGCTGAAGATAGCGATTACTACAC CCAACCAGGTGATTACTACCGCTCATTGCCAGCTGATGAAAAAGAAAGGTTGCATGACACTGTTGGGGAGTCTTTAGCTC ATGTTACCCATAAGGAAATTGTGGATAAGCAATTGGAGCATTTCAAGAAAGCTGACCCCAAATACGCTGAGGGAGTTAAA AAAGCTCTTGAAAAACACCAAAAAATGATGAAAGACATGCATGCAAAAGACATGCATCACATGAAAAAGAAAAAGTAA Protein sequence : MVNKDVKQTTAFGAPVWDDNNVITAGPRGPVLLQSTWFLEKLAAFDRERIPERVVHAKGSGAYGTFTVTKDITKYTKAKI FSKVGKKTECFFRFSTVAGERGSADAVRDPRGFAMKYYTEEGNWDLVGNNTPVFFIRDGIKFPDFIHTQKRDPQTNLPNH DMVWDFWSNVPESLYQVTWVMSDRGIPKSFRHMDGFGSHTFSLINAKGERFWVKFHFETMQGVKHLTNEEAAEIRKYDPD SNQRDLFNAIARGDFPKWKLSIQVMPEEDAKKYRFHPFDVTKIWYLQDYPLMEVGIVELNKNPENYFAEVEQAAFSPANV VPGIGYSPDRMLQARLFSYGDTHRYRLGVNYPQIPVNRPRCPFHSSSRDGYMQNGYYGSLQNYTPSSLPGYKEDKSARDP KFNLAHIEKEFEVWNWDYRAEDSDYYTQPGDYYRSLPADEKERLHDTVGESLAHVTHKEIVDKQLEHFKKADPKYAEGVK KALEKHQKMMKDMHAKDMHHMKKKK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| katA | ABD94664.1 | catalase isozyme A | Not tested | ExoU island A | Protein | 9e-134 | 60 |
| katA | YP_005126717.1 | catalase | Not tested | Not named | Protein | 6e-92 | 52 |
| katA | YP_005680448.1 | catalase | Not tested | PiCp 3 | Protein | 6e-90 | 47 |
| katA | YP_005682539.1 | catalase | Not tested | PiCp 3 | Protein | 6e-90 | 47 |
| katA | YP_003782575.1 | catalase | Not tested | PiCp 3 | Protein | 6e-90 | 47 |
| katA | YP_005684630.1 | catalase | Not tested | PiCp 3 | Protein | 6e-90 | 47 |
