Gene Information

Name : HPGAM_02780 (HPGAM_02780)
Accession : YP_005780279.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagC, cag25)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 561845 - 562192 bp
Length : 348 bp
Strand : -
Note : -

DNA sequence :

ATGAAATTTTTTACAAGAATCACTGACAGCTACAAGAAAGTTGTAGTAACTTTAGGGCTAGCGGTAACAACCAATCCTTT
AATGGCTGTCAGCAGTCCTGCAGCAGGCATTACTGAGACTAAAACTTTGGTCATTCAGATCATTTCTGTTCTAGCGATCG
TAGGGGGTTGCGCTCTAGGAGTCAAAGGTATAGCGGATATTTGGAAAATCTCTGATGACATCAAAAGAGGTCAAGCGACT
GTTTTTGCTTACGCGCAGCCCATAGCTATGTTAGCGGTGGCAGGTGGCATTATCTATTTAAGCACTAAGTTTGGCTTTAA
TATTGGCGAAGGTGGAGGAGCTAGTTAA

Protein sequence :

MKFFTRITDSYKKVVVTLGLAVTTNPLMAVSSPAAGITETKTLVIQIISVLAIVGGCALGVKGIADIWKISDDIKRGQAT
VFAYAQPIAMLAVAGGIIYLSTKFGFNIGEGGGAS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
cag25	AAR03908.1	Cag25	Virulence	cag PAI	Protein	7e-42	98
cag25	AAR03938.1	Cag25	Virulence	cag PAI	Protein	1e-41	96
HP0546	NP_207342.1	cag pathogenicity island protein (cag25)	Virulence	cag PAI	Protein	3e-41	96
HP0546	BAD14017.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	2e-46	95
cagC	NP_223212.1	cag island protein	Virulence	cag PAI	Protein	3e-41	95
cagC	AGC69805.1	cag pathogenicity island protein C	Virulence	cag PAI	Protein	2e-46	94
cagC	YP_005774525.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	7e-46	94
cagC	YP_005779047.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	4e-46	94
cagC	YP_005775746.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	4e-46	94
HP0546	BAD14044.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	1e-46	94
HP0546	BAD13907.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	4e-46	94
HP0546	BAD13934.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	4e-46	94
cagC	YP_003728718.1	cag pathogenicity island protein C	Virulence	cag PAI	Protein	8e-36	94
HP0546	BAD14071.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	3e-46	94
cagC	AAC44704.1	CagC	Virulence	cag PAI	Protein	9e-41	94
HP0546	BAD13798.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	3e-46	94
HP0546	BAD13879.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	3e-46	94
cag25	AAR03969.1	Cag25	Virulence	cag PAI	Protein	2e-40	94
HP0546	BAD13962.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	1e-46	93
cag25	AAR03880.1	Cag25	Virulence	cag PAI	Protein	9e-46	93
cagC	YP_005777287.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	3e-45	93
HP0546	BAD13989.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	2e-45	92
HP0546	BAD13825.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	2e-44	91
HP0546	BAD13852.1	cag pathogenicity island protein	Virulence	cag PAI	Protein	9e-40	90

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
HPGAM_02780	YP_005780279.1	cag pathogenicity island protein (cagC, cag25)	VFG0305	Protein	8e-42	96