Gene Information

Name : HPGAM_02775 (HPGAM_02775)
Accession : YP_005780278.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein D
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 561220 - 561843 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGATCAATCATAATAGTAATAAAAAACTGAGAGGCTTTTTTTTGAAAGTTCTCTTAAGTCTCGTTGTTTTCAGTTCGTA
TGGGTCAGCCAATGATGACAAGGAAGCCAAGAAAGAAGCGCTAGAAAAAGAAAAAAACACTCCCAATGGGCGTGTTTATA
CGAATTTGGATTTTGATAGTTTCAAAGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC
GATATTATCAAAGATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCCATTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGACTGAATGTAGAATTACAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTATCATTGCGCGGGGAAACAAGAGAA
ATTTTATGCGATGATAAGCTATACAATGTTTTATTGGCCGTATTCAATTCTTATGACCCTAACGATCTTTTGAAACATAT
TAGCACCATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTGTATCTATAA

Protein sequence : 
MINHNSNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEALEKEKNTPNGRVYTNLDFDSFKATIKNLKDKKVTFKEVNP
DIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE
ILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 5e-74 99
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 4e-71 99
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 5e-73 99
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 4e-74 98
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 3e-74 98
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-74 98
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-74 98
cagD AAF80210.1 CagD Virulence cag PAI Protein 5e-71 98
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 3e-73 97
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-73 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 97
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 1e-72 97
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-73 96
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-73 96
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-73 96
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 96
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 96
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 96
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 96
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 95
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 95
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 95
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 95

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02775 YP_005780278.1 cag pathogenicity island protein D VFG0304 Protein 9e-74 97