Gene Information

Name : HPGAM_02755 (HPGAM_02755)
Accession : YP_005780274.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 555841 - 556953 bp
Length : 1113 bp
Strand : -
Note : COG0249 Mismatch repair ATPase (MutS family)

DNA sequence : 
ATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAGGATTCTTATCGCAAGTCTCCTCAATCATCTCAAGCACAAG
TGGTGTCGCAGGGCCATTTGCAGGAATAGTAGCGGGCGCTATGACAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAAAGCATCGCTGAAGCTGTAAGCGTGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAGCACGCAAGGCGCGCAGATTGGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACTACCCCTAAAAATCCTAGCGCTATTGAAGCTTATGCGACGAATCAAATTGCTGTTCCTAGCGTGCCAACA
ACGGTTGAAATGATGAGCGGTATATTAGGCAATATTACAAGCGCAGCACCAAAATACGCCCTAGCTCTACAAGAGCAACT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGCGCGCTTGTTG
GCTCATCAAAAGTGTTTTTCAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTTTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTAGCCACTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAGGT
TCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAGAACGCTTCTCAAATGATACTCGGTCAATCAGGATTGGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATTTGACTTACCTTGATTACAT
CAAAGACAAGCTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSQVSSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSVPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGSTQGAQIGAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAK
YQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILGQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-160 99
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 2e-160 99
cagH AAC44699.1 CagH Virulence cag PAI Protein 2e-161 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 3e-159 98
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 3e-158 98
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 3e-159 98
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 2e-158 98
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 98
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 8e-159 98
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 2e-159 98
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 8e-159 98
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 2e-158 98
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-159 98
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-157 98
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 6e-158 98
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 3e-159 98
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 3e-158 98
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-157 97
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-158 97
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-157 97
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-157 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02755 YP_005780274.1 cag island protein VFG0300 Protein 1e-158 98