Gene Information

Name : HPGAM_02750 (HPGAM_02750)
Accession : YP_005780273.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein I
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 554685 - 555830 bp
Length : 1146 bp
Strand : -
Note : -

DNA sequence : 
GTGAAATGTTTTTTAAGCATATTTTCTTTCTTGACTTTTTGTGGCTTGTCCTTGAATGGTGCAGGGGCAGTAATAACGCT
TGAACCTGCCTTAAAAGCCATTCAGGCGGACGCACAAGCCAAACAAAAAACCGCTCAAGCCGAATTAAAAGCCATAGAAG
CTCAGTCTAGTGCCAAAGAAAAAGCCATTCAAGTGCAGATAGAGGGAGAATTGAGGACTCAGCTTGCAACCATGAGCGCT
ATGTTAAAAGGGGCTAATGGCGTCATTAATGGTGTCAATGGCATGACAGGGGGTTTTTTTGCAGGTTCAGACATCTTGCT
TGGCGTCATGGAAGGGTATTCAAGCGCGCTTAGCGCATTGGGGGGGAATGTCAAAATAATCGTGGAAAAACAAAAAATTA
ACACCCAAACAGAAATCCAAAACATGCAAATCGCGCTCCAAAAAAATAACGAAATAATCAAGCTCAAAATGAATCAACAA
AACGCTCTCTTAGAAGCGTTAAAAAATAGCTTTGAACCGAGCGTTACTCTAAAAACACAAATGGAAATGCTTTCTCAAGC
TCTAGGAAGTTCTTCTGATAACGCTAAATACATCGCTTACAATACGATCGGCATCAAGGCGTTTGAAGAAACCTTAGAAG
GTTTTGAAACATGGTTGAAAGAGGCTATGAAAAAAGCGACCCTTATTGACTACAATTCCCTAACAGGTCAGGCTTTGTTT
CAAAGCGCCATCTATGCGCCTGCTCTTAGTTTTTTTTCAAGCATGGGCACACCATTTGGAATCATTGAAACATTCACTCT
AGCGCCCACAAAATGCCCCTATCTTGATGGGCTAAAAATTTCAGCATGCCTTATGGGGCAGGTTATTCAGAATTACAGAA
TGATTGTAGCCCTTATTCAAAATAAACTGAGTGATGCAGATTTTCAAAATATCGCTTATTTGAATGGGATCAATGAAGAA
ATCAAAACCTTAAAAGGATCAGTAGATTTGAACGCGCTCATAGAAGCTGCTATCTTAAACGCAGAAAATCATTTAAACTA
TATAGAAAATCTTGAAAAAAAAGCCGACCTTTGGGAAGAACAACTGAAATTAGAGAGGGAAACGACAGCAAGAAACATTG
CTAACTCTAAAGTTATTGTCAAATGA

Protein sequence : 
MKCFLSIFSFLTFCGLSLNGAGAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQVQIEGELRTQLATMSA
MLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKIIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQ
NALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLEGFETWLKEAMKKATLIDYNSLTGQALF
QSAIYAPALSFFSSMGTPFGIIETFTLAPTKCPYLDGLKISACLMGQVIQNYRMIVALIQNKLSDADFQNIAYLNGINEE
IKTLKGSVDLNALIEAAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIANSKVIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0540 BAD13928.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-151 98
cag19 AAR03963.1 Cag19 Virulence cag PAI Protein 1e-149 97
HP0540 NP_207336.1 cag pathogenicity island protein (cag19) Virulence cag PAI Protein 2e-149 97
cag19 AAR03902.1 Cag19 Virulence cag PAI Protein 3e-150 97
cagI NP_223206.1 cag island protein Virulence cag PAI Protein 5e-150 97
cagI AAF80208.1 CagI Virulence cag PAI Protein 2e-149 97
HP0540 BAD14038.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-149 97
cagI YP_003728724.1 cag pathogenicity island protein I Virulence cag PAI Protein 3e-149 97
cag19 AAR03932.1 Cag19 Virulence cag PAI Protein 1e-148 96
cagI AGC69802.1 cag pathogenicity island protein I Virulence cag PAI Protein 8e-149 96
HP0540 BAD13873.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-149 96
HP0540 BAD13956.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-149 96
cag19 AAR03874.1 Cag19 Virulence cag PAI Protein 4e-149 96
cagI YP_005775740.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-149 96
HP0540 BAD13792.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 95
HP0540 BAD13983.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-144 95
cagI YP_005774531.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-141 95
cagI YP_005777281.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-146 95
HP0540 BAD13819.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-147 95
cagI YP_005779053.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-147 95
HP0540 BAD14011.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 95
HP0540 BAD13846.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 95
HP0540 BAD14065.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-146 94
HP0540 BAD13901.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-146 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02750 YP_005780273.1 cag pathogenicity island protein I VFG0299 Protein 9e-150 97