Gene Information

Name : HPGAM_02740 (HPGAM_02740)
Accession : YP_005780271.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein (cagN, cag17)
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 552973 - 553893 bp
Length : 921 bp
Strand : +
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAATTAGGTTCTGTCGCTCTTTATTCTTTGGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAGAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACACTCTATCAAAGACATGACG
ACAAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGGAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTGTTCAAAAAAAAGCGGCTAAGCACAGAGG
ATTGCAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGACAACCCTAATGGCAATTCTTCCACTGAAACCAAATCTA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTGAT
GAGTGGAGAACGCCTGAAATTGAAATCGTTATCAATAAGTGTATTATTTCAAGCAACGATTATGATGGGTTAAGAAAGTG
TTTGATCAAAGACATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACCTGAGTGGTTTAAAACTCGCTCTCAATAACAGCGACAATAGAACCTTTCTTATAGCTTCGTGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAATAACTACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAACATTCTCAAACAATCGCTCTAAATCCGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPD
EWRTPEIEIVINKCIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSDNRTFLIASC
AICEKRKKEMEQENNYQDTTNASEFGATDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-129 99
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 7e-122 98
cagN AAF80207.2 CagN Virulence cag PAI Protein 7e-122 97
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-119 96
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 6e-120 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-116 96
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-117 96
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-119 96
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 8e-120 96
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-113 95
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-114 95
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-119 95
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 95
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-112 95
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 95
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-113 95
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-118 95
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 9e-118 95
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 1e-118 95
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 7e-119 95
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 94
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 94
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 94
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 2e-116 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02740 YP_005780271.1 cag pathogenicity island protein (cagN, cag17) VFG0297 Protein 3e-120 96