Gene Information

Name : HPGAM_02725 (HPGAM_02725)
Accession : YP_005780268.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : CAG pathogenicity island protein S
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 549037 - 549630 bp
Length : 594 bp
Strand : -
Note : -

DNA sequence : 
ATGAGTAATAACATGCGAAAACTCTTCTTAATGATTGCCAACTCAAAAGATAAGAAAGAAAAACTTATTAAGAGCTTGCA
AGAGAACGAACTTTTAAGCACTGATGAAAAAAAGAAAATCATGGATCAAATAAAAACCATGCATGATTTTTTCAAACAGA
TGCATACAAATAAGGGAGCGTTAGATAAGGTTCTAAGAAATTACATGAAAGATTATCGCGCTGTTATCAAAAGCATTGGT
ATTGATAAATTTAAAAAGGTTTATCGATTGCTTGAGAATGAGACTATGCAACTGTTGCATGCGATTACGGAGAATCCTAA
TTTCTTATTCTCCAAATTTGATCGATCAATTCTTGGAATATTTCTGCCTTTCTTCAGCAAGCCCATCATGTTTAAGATGA
GTATTAGAGAAATGGACTCGCAAATAGAATTGTATGATACTAAGCTCCCACTATTGAAATTGTTTGTGATGACAGATGAA
GAAGTGAATTTCTATGCTAATCTAAAAACCATTGAACAATATAACGACTATGTTAGGGATTTGCTGATGAAATTTGATCT
TGAAAAATACATGGAAGAAAAACAAAATGCTTGA

Protein sequence : 
MSNNMRKLFLMIANSKDKKEKLIKSLQENELLSTDEKKKIMDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG
IDKFKKVYRLLENETMQLLHAITENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYDTKLPLLKLFVMTDE
EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMEEKQNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0534 BAD13922.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-84 97
HP0534 NP_207330.1 cag pathogenicity island protein (cag13) Virulence cag PAI Protein 9e-83 95
HP0534 BAD13840.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-83 95
cagS AAF80204.1 CagS Virulence cag PAI Protein 2e-83 95
HP0534 BAD13786.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-83 95
HP0534 BAD13895.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-83 95
cagS NP_223200.1 cag island protein Virulence cag PAI Protein 4e-83 95
HP0534 BAD14032.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-83 95
cagS YP_005774536.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-83 95
cag13 AAR03868.1 Cag13 Virulence cag PAI Protein 4e-83 95
cagS YP_005779057.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-83 95
HP0534 BAD14059.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-83 94
cagS YP_005777277.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-82 94
cagS YP_003728731.1 cag pathogenicity island protein S Virulence cag PAI Protein 5e-83 94
HP0534 BAD13813.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-82 94
HP0534 BAD13950.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-83 94
HP0534 BAD14005.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-83 94
cag13 AAR03926.1 Cag13 Virulence cag PAI Protein 6e-82 93
cagS YP_005775736.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-82 93
HP0534 BAD13867.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-82 93
cag13 AAR03957.1 Cag13 Virulence cag PAI Protein 2e-82 93
cag13 AAR03896.1 Cag13 Virulence cag PAI Protein 2e-82 93
HP0534 BAD13977.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-82 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02725 YP_005780268.1 CAG pathogenicity island protein S VFG0293 Protein 3e-83 95