Gene Information

Name : HPGAM_02720 (HPGAM_02720)
Accession : YP_005780267.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : CAG pathogenicity island protein T
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 547993 - 548835 bp
Length : 843 bp
Strand : +
Note : -

DNA sequence : 
ATGAAACGGAGAGCAAGTGTTTTAATCGGTGCGGCAATTCTGTGCTTAATTTTAAGCGCGTGCAGTAACTATGCGAAAAA
AGTGGTGAAACAAAAGAACCATGTTTATACGCCTGTGTATAATGAACTGATAGAAAAGTATAGTGAGATCCCCTTAAATG
ACAAACTCAAAGACACACCATTCATGGTGCAAGTGAAGTTGCCAAATTACAAGGACTATTTGTTGGATAATAAACAAGTT
GTACTAACTTTCAAACTTGTTCATCATTCTAAAAAGATTACGCTCATAGGCGATGCCAATAAGATCCTTCAATACAAGAA
TTACTTCCAAGCTAATGGAGCAAGATCTGACATTGATTTTTACTTGCAGCCTACTTTGAATCAAAAAGGTGTGGTGATGA
TAGCGAGTAACTACAATGATAATCCTAACAACAAAGAACAACCACAGACTTTTGATGTGTTGCAAGGAAGTCAGCCAATG
CTAGGGGCTAACACAAAAAACTTGCATGGCTATGATGTGAGTGGAGCAAACAACAAACAAGTGATCAATGAAGTGGCGAG
AGAAAAAGCCCAGCTAGAAAAAATCAATCAGTATTACAGAACTCTTTTGCAAGATAAGGAAAATGAATACACCACTAGGA
AAAATAATCAAAGAGAAATTTTAGAAACCTTGAGTAATCGTGCAGGTTATCAAATGAGGCAGAATGTGATTAGTTCTGAG
ATTTTTAAGAATGGCAACTTGAACATGCAAACCAGAGAGGAAGAAGTTAGGGAGAAGCTGCAAGAAGAAAGAGAGAATGA
ATACTTACGCAATCAAATCAGAAGTTTGCTCAGTGGTAAGTGA

Protein sequence : 
MKRRASVLIGAAILCLILSACSNYAKKVVKQKNHVYTPVYNELIEKYSEIPLNDKLKDTPFMVQVKLPNYKDYLLDNKQV
VLTFKLVHHSKKITLIGDANKILQYKNYFQANGARSDIDFYLQPTLNQKGVVMIASNYNDNPNNKEQPQTFDVLQGSQPM
LGANTKNLHGYDVSGANNKQVINEVAREKAQLEKINQYYRTLLQDKENEYTTRKNNQREILETLSNRAGYQMRQNVISSE
IFKNGNLNMQTREEEVREKLQEERENEYLRNQIRSLLSGK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0532 BAD14057.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-117 98
cagT YP_005775735.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-117 98
cagT AGC69799.1 cag pathogenicity island protein T Virulence cag PAI Protein 5e-117 98
cagT YP_003728732.1 cag pathogenicity island protein T Virulence cag PAI Protein 7e-117 98
HP0532 BAD13865.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-117 98
HP0532 BAD13838.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-116 98
HP0532 BAD14003.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-116 98
cag12 AAR03867.1 Cag12 Virulence cag PAI Protein 4e-116 98
cagT NP_223199.1 cag island protein Virulence cag PAI Protein 4e-116 98
HP0532 BAD13811.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-117 98
HP0532 NP_207328.1 cag pathogenicity island protein (cag12) Virulence cag PAI Protein 3e-116 98
HP0532 BAD13784.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-117 98
HP0532 BAD13920.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-116 98
cagT YP_005777276.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-117 98
HP0532 BAD13893.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-117 98
cagT AAF80203.1 CagT Virulence cag PAI Protein 3e-116 98
cagT YP_005779058.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-117 98
HP0532 BAD13948.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-117 98
cag12 AAR03895.1 Cag12 Virulence cag PAI Protein 2e-116 98
cagT YP_005774537.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-117 98
cag12 AAR03925.1 Cag12 Virulence cag PAI Protein 2e-116 97
cag12 AAR03956.1 Cag12 Virulence cag PAI Protein 2e-116 97
HP0532 BAD13975.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-116 97
HP0532 BAD14031.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-116 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02720 YP_005780267.1 CAG pathogenicity island protein T VFG0292 Protein 1e-116 98