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Name : HPGAM_02705 (HPGAM_02705) Accession : YP_005780264.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Virulence Product : cag pathogenicity island protein W Function : - COG functional category : - COG ID : - EC number : - Position : 544551 - 546158 bp Length : 1608 bp Strand : - Note : - DNA sequence : ATGTTTAATCTTAAAAGGACTTTTTTAATAACGATCATGAGTTTTTTTCTCATTGTTCCCAATTGGTTGAAAGCTATTGA TTTGCCCATTGTTTCAAATCTCAAAATTTACCAAACAGTTTATTGCATGCTGATACCGAGTTATGTTTTAACCAACAAGA GTTTTGCAGATATTTTAACAGGCTATACATCTATTGGCCAATCAGGGAGTGGAAAGAGTTCAGGGCAGGGTGTGATCGAA GCGCTTAGCACACCATTAGCCACAAGTTTAGCCGCTAGCAATCTGGTGAAATATTTGAACACTTTAGGTCCTTTATGGGG ATCGGCGTGGGCAAGTGTTGCTACAGCTATACAAGGCTTTGCTCTAACGCCATCAAGTGGCTGTAATTTTGGTTGGAACG CATTGATAAATAAAAACATAGACGTATCCATGGATAGCATGCTAGACAATTTGAGCAACAAGATTCAGAATTTCACCAAA GGCGGTGTTGAGGACAATGTGAAAGGCAATGTTCTTTTACAAATAATTAGCTCAATAACCGCTCAAGCTTCTACGAATAT TACAGCTGATGGTTTGATTTGGCTGATTGGCAAAGAATTCACTGCAAATAAACTGCAAAACAACACTACAGCCATGCTTG CTTTTGCCGCACTAGAATCTGTTGTCAAAGGAGCGGACGCTGCTGTTCTTCCTGCATATGGTGTAGTCAATCTGCCTGAT ATTATCATAGGGCAAGGGTCATATCTTGATTTTGTTTCTTACCTAATTTATATTGTTTTTGGGATTTTTGTTTTCATTTC TTTTATGAAATTGAGGGATATTTCAAATGGTATTCAGATTAACATAGGTTTTGAATACATGCGATTTATTGGGGGGACAT TATTCAAAATGGCGATGGTCTCTTTTATCGCCTATGCAGGTTTTGGTTATCTTTATAAAATCTCTTATTCCATTTATTTT GGTTTAGCAGGCGCTTTTGGGCTGAATCAAGTTCTTTTTTGGGCTTTAGATTTAGTGCTGAATTACACTGTTAATTCAAT TTTACCTGCGGTAAGAGCTGTTTTTTCTAATGTTGGCAACAACGCTCCTAGTTTGTTACAAGGCTTGCAAGTGGCAGGTA TTTCTTTATTCGCCATTTTTATGCAAGTAACTATCATTATGAGAATAAGCACTGTGGTTGTGAAACCTTTGATAGCTGGG GCTTTTAGCGGTATTGTGTTCCCTATTGCGGTATGTTTGATCGTGCTAGATTGGTTCAAAGATTCTATGAAAAACATATT GATATGGTTTATTAATAATTTGTTTATCTTGGTTCTAGCTATTCCTATTTTACTCTTTGGTGTTTTGGCATTATTGGCAT TCAATTTGACCATAACGCCCTCTGTTGCTATACAAAACATCAATCAAGGGGGATTGGGTATTGATTCAACTATTGCGAGT TTGATCACTCTATTTATTTTAAAAGGTTTCATAGAGACGATTATTGAGAGTGTCAATGCGATCGTTAATACCATTTTCAG CTCTGTCTCTATAGATGGCAGCAGGATGGATAGAGAAAGAGATGCCTTAATGGTAGGAAGAGTTGGTGGATCTATGTTTA AAGGATAA Protein sequence : MFNLKRTFLITIMSFFLIVPNWLKAIDLPIVSNLKIYQTVYCMLIPSYVLTNKSFADILTGYTSIGQSGSGKSSGQGVIE ALSTPLATSLAASNLVKYLNTLGPLWGSAWASVATAIQGFALTPSSGCNFGWNALINKNIDVSMDSMLDNLSNKIQNFTK GGVEDNVKGNVLLQIISSITAQASTNITADGLIWLIGKEFTANKLQNNTTAMLAFAALESVVKGADAAVLPAYGVVNLPD IIIGQGSYLDFVSYLIYIVFGIFVFISFMKLRDISNGIQINIGFEYMRFIGGTLFKMAMVSFIAYAGFGYLYKISYSIYF GLAGAFGLNQVLFWALDLVLNYTVNSILPAVRAVFSNVGNNAPSLLQGLQVAGISLFAIFMQVTIIMRISTVVVKPLIAG AFSGIVFPIAVCLIVLDWFKDSMKNILIWFINNLFILVLAIPILLFGVLALLAFNLTITPSVAIQNINQGGLGIDSTIAS LITLFILKGFIETIIESVNAIVNTIFSSVSIDGSRMDRERDALMVGRVGGSMFKG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| HP0529 | BAD13862.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagW | AGC69796.1 | cag pathogenicity island protein W | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagW | YP_003728735.1 | cag pathogenicity island protein W | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag9 | AAR03864.1 | Cag9 | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag9 | AAR03892.1 | Cag9 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0529 | BAD13890.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0529 | BAD14028.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagW | YP_005774540.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0529 | BAD13835.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| orf16 | NP_223196.1 | cag island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0529 | BAD13917.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag9 | AAR03922.1 | Cag9 | Virulence | cag PAI | Protein | 0.0 | 99 |
| cagW | YP_005775732.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0529 | BAD13781.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| cag-W | AAF80200.1 | Cag-W | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0529 | BAD13945.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0529 | NP_207325.1 | cag pathogenicity island protein (cag9) | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0529 | BAD14000.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0529 | BAD13972.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| cagW | YP_005779061.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| cag9 | AAR03953.1 | Cag9 | Virulence | cag PAI | Protein | 0.0 | 98 |
| cagW | YP_005777273.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0529 | BAD13808.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0529 | BAD14054.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPGAM_02705 | YP_005780264.1 | cag pathogenicity island protein W | VFG0289 | Protein | 0.0 | 98 |
