Gene Information

Name : HPGAM_02685 (HPGAM_02685)
Accession : YP_005780260.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Virulence
Product : cag island protein, DNA transfer protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 535371 - 536363 bp
Length : 993 bp
Strand : -
Note : COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis

DNA sequence : 
ATGACTGAAGACAGATTGAGTGCAGAAGATAAAAAATTTCTAGAAGTAGAAAGAGCCTTAAAAGAAGCGGCATTAAATCC
TCTAAGGCATGCTACTGAAGAACTTTTTGGTGATTTTTTAAAAATGGAAAATATCACTGAGATTTGTTACAATGGGGACA
AGGTTGTATGGGTTTTAAAAAATAATGGCGAATGGCAACCGTTTGATGTGAGAAACAAGAAAGCCTTTAGCTTATCTCGT
TTAATGCATTTCGCTCGGTGTTGTGCAAGTTTTAAGAAAAAAACAATAGACAACTATGAAAATCCTATTTTGAGTAGCAA
TTTAGCGAATGGTGAAAGGGTGCAGATTGTCCTTTCCCCTGTTACAGTTAATGATGAAACCATTTCCATATCCATAAGGA
TACCTAGCAAAACAACCTATCCTCATAGCTTTTTTGAAGAACAAGGTTTTTATAATCTACTAGACAACAAAGAACAAGCG
ATCAGCGCGATTAAAGATGGTATTGCTATTGGTAAGAATGTGATTGTTTGTGGTGGCACAGGAAGCGGTAAAACGACTTA
TATCAAAAGCATCATGGAGTTTATCCCCAAAGAAGAAAGAATCATATCCATTGAAGACACCGAAGAGATCGTATTCAAAC
ACCACAAGAACTACACACAGCTTTTTTTTGGTGGGAATATCACCTCTGCTGATTGCTTAAAGTCATGTTTGAGAATGCGG
CCTGATAGAATCATTTTAGGGGAACTCAGAAGCAGTGAGGCATACGATTTTTATAATGTGCTTTGTAGCGGCCATAAAGG
CACGCTAACCACTCTACATGCAGGGAGCAGTGAAGAAGCGTTTATTCGTTTAGCTAACATGAGTTCATCTAATAGCGCAG
CAAGGAATATCAAGTTTGAAAGTCTCATTGAAGGCTTTAAAGATTTGATTGATATAATCGTTCATATCAACCACCACAAA
CAGTGTGATGAGTTTTATATCAAACATAGGTAG

Protein sequence : 
MTEDRLSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGDKVVWVLKNNGEWQPFDVRNKKAFSLSR
LMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLDNKEQA
ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR
PDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNSAARNIKFESLIEGFKDLIDIIVHINHHK
QCDEFYIKHR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0525 BAD13941.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-148 99
HP0525 BAD13804.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
HP0525 BAD14050.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
virB11-2 YP_005777269.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-146 99
HP0525 BAD13996.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-148 99
HP0525 BAD14024.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-147 99
virB11-2 YP_005774544.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-148 99
cag-alfa AAF80196.1 Cag-alfa Virulence cag PAI Protein 4e-148 99
HP0525 BAD13913.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-147 99
HP0525 NP_207321.1 virB11-like protein Virulence cag PAI Protein 6e-148 99
HP0525 AAR03888.1 VirB11-like protein Virulence cag PAI Protein 4e-148 99
HP0525 BAD13886.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-148 99
virB11-4 YP_003728739.1 cag pathogenicity island protein alpha Virulence cag PAI Protein 6e-148 99
HP0525 AAR03948.1 VirB11-like protein Virulence cag PAI Protein 4e-148 99
HP0525 AAR03917.1 VirB11-like protein Virulence cag PAI Protein 7e-148 99
virB11-2 YP_005779065.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
virB11 AGC69807.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-148 99
HP0525 AAR03859.1 VirB11-like protein Virulence cag PAI Protein 6e-148 99
virB11-2 YP_005775728.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
HP0525 BAD13831.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-148 99
HP0525 BAD13777.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-148 99
virB11_1 NP_223192.1 cag island protein, DNA transfer protein Virulence cag PAI Protein 3e-148 99
HP0525 BAD13968.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-146 98
HP0525 BAD13858.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-147 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
HPGAM_02685 YP_005780260.1 cag island protein, DNA transfer protein VFG0285 Protein 2e-148 99