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Name : HPGAM_02680 (HPGAM_02680) Accession : YP_005780259.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Virulence Product : CAG pathogenicity island protein 5 Function : - COG functional category : - COG ID : - EC number : - Position : 533116 - 535362 bp Length : 2247 bp Strand : - Note : COG3505 Type IV secretory pathway, VirD4 components DNA sequence : ATGGAAGACTTTTTGTATAACGCCTTATACTTCATAGAGGATTATAAGTTGGTTGTTATTTTTAGTTTCATAGGGTTAAT AGCGTTGTTTTTCCTCTACAAATTCATAAAAACTCAAAAAAAGGTTTTTAAAGATAAAGCTAACCAGCCTCAAAAGAAAA AAAGCTTTAAAGAAATCATTATAGATGGGCTGAAAGAAAGGGTTAAAACCTTTGGCTTTTGGTTGCAAGCGATACTATTA CTATCCTATTCTTTTATCACATCAGGGTTATTTTTCTTGATTCTCTTAGGTAATTTTTATGATGATAATAAATTGCCTGA GAGCGATGATGATCTTTTTGATATATGGGTCTATGCGATACAAGATTTTCCTGCATACTATTTTAAGGCACTCACTTTTA GCTCGCTCAAGATTTATGGGTTCAATATATCCTTAGTCGTATATAGTTCTATTTTATGCTCTTATATATTCATTACCTTT TTTGTGTGGTTCTTAAAATACTTAACTCGGACTAGAGATATAGGAGCGAATAAAAAAGTTGATGATCTCTTTGGTAGCGC GAGTTGGGAAACTGAAGAGAAAATGATCAAAGCCAAGCTTATCACACCCAACAATAAAAAACGCGCCTTTGACAAGCGAG AGGTGATTGTAGGCAGGCGAGGTTTGGGGGATTTTATCGCTTACGCAGGACAGGCGTTCATTGGACTCATTGCCCCTACT AGGAGCGGTAAGGGGGTGGGTTTCATCATGCCCAATATGATCAATTATCCTCAAAATATCGTTGTGTTTGATCCTAAGGC TGACACTATGGAAACTTGCGGGAAAATCAGAGAGAAACGCTTCAACCAAAAAGTGTTCATCTATGAACCTTTCTCCTTAA AAACACACCGATTTAATCCTTTCGCTTATGTGGATTTTGGTAATGATGTGGTTTTGACTGAAGACATACTCTCTCAAATT GACACACGCTTAAAAGGGCATGGCATGGTGGCTAGTGGAGGGGATTTTTCCACTCAAATCTTTGGATTGGCTAAGTTGGT GTTCCCTGAAAGACCTAATGAAAAAGATCCTTTCTTTAGCAATCAAGCGCGAAACCTCTTTGTCATCAATTGCAATATTT ACAGGGATCTCATGTGGACTAAAAAGGGGCTTGAGTTTGTCAAAAGAAAAAAAATCATCATGCCTGAAACCCCTACGATG TTTTTCATAGGTTCTATGGCAAGCGGGATCAACCTGATTGATGAAGACACAAACATGGAAAAAGTCGTGTCTTTAATGGA ATTTTTTGGAGGTGAAGAAGATAAGAGTGGCGATAATCTAAGAGCGCTTAGTCCTGCCACTAGAAACATGTGGAATAACT TTAAGACAATGGGTGGTGCTAGAGAAACTTATAGCTCGGTTCAAGGGGTATATACTTCAGCCTTTGCTCCTTATAATAAC GCAATGATCAGGAATTTCACGAGCGCTAATGATTTTGATTTTAGGCGTTTAAGGATCGATGAGGTCAGCATTGGCGTGAT CGCTAATCCTAAAGAAAGCACTATTGTTGGACCGATATTAGAGCTGTTTTTCAACGTGATGATTTATAGCAACCTGATTC TGCCAATCCATGATCCACAATGCAAAAGAAGCTGCTTGATGCTCATGGATGAATTCACTTTGTGTGGCTATTTAGAGACC TTTGTTAAAGCGGTAGGGATCATGGCAGAATACAACATGCGCCCTGCTTTTGTGTTTCAAAGTAAGGCACAATTAGAAAA TGATCCCCCACTTGGTTATGGTAGGAATGGCGCTAAGACTATTTTAGACAACCTTTCTTTGAATATGTATTATGGGATCA ACAACGATAACTACTATGAACATTTTGAAAAGCTTTCTAAAGTGTTAGGGAAATACACAAGGCAAGATGTGAGCCGAAGC ATTGATGACAATACGGGTAAGACCAACACTTCTATCAGCAACAAGGAGCGGTTTTTGATGACCCCTGATGAATTGATGAC TATGGGCGATGAGCTTATCATTTTAGAAAATACGCTCAAACCCATCAAATGCCACAAGGCGCTTTACTATGATGATCCTT TCTTCACCGATGAGCTCATTAAGGTGAGTCCAAGCTTGAGCAAGAAATACAAATTGGGGAAAGTGCCTAATCAAGCAACA TTTTATGATGACTTGCAAGCCGCTAAAACCAGAGGCGAATTGAGCTATGATAAATCTTTAGTGCCTGTGGGTTCAAGCGA ACTGTGA Protein sequence : MEDFLYNALYFIEDYKLVVIFSFIGLIALFFLYKFIKTQKKVFKDKANQPQKKKSFKEIIIDGLKERVKTFGFWLQAILL LSYSFITSGLFFLILLGNFYDDNKLPESDDDLFDIWVYAIQDFPAYYFKALTFSSLKIYGFNISLVVYSSILCSYIFITF FVWFLKYLTRTRDIGANKKVDDLFGSASWETEEKMIKAKLITPNNKKRAFDKREVIVGRRGLGDFIAYAGQAFIGLIAPT RSGKGVGFIMPNMINYPQNIVVFDPKADTMETCGKIREKRFNQKVFIYEPFSLKTHRFNPFAYVDFGNDVVLTEDILSQI DTRLKGHGMVASGGDFSTQIFGLAKLVFPERPNEKDPFFSNQARNLFVINCNIYRDLMWTKKGLEFVKRKKIIMPETPTM FFIGSMASGINLIDEDTNMEKVVSLMEFFGGEEDKSGDNLRALSPATRNMWNNFKTMGGARETYSSVQGVYTSAFAPYNN AMIRNFTSANDFDFRRLRIDEVSIGVIANPKESTIVGPILELFFNVMIYSNLILPIHDPQCKRSCLMLMDEFTLCGYLET FVKAVGIMAEYNMRPAFVFQSKAQLENDPPLGYGRNGAKTILDNLSLNMYYGINNDNYYEHFEKLSKVLGKYTRQDVSRS IDDNTGKTNTSISNKERFLMTPDELMTMGDELIILENTLKPIKCHKALYYDDPFFTDELIKVSPSLSKKYKLGKVPNQAT FYDDLQAAKTRGELSYDKSLVPVGSSEL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cag5 | YP_005779066.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03887.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13776.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD14023.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13830.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_003728740.1 | cag pathogenicity island protein beta | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13885.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03916.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | NP_207320.1 | cag pathogenicity island protein (cag5) | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13912.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13967.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| virD4 | NP_223191.1 | cag island protein, DNA transfer protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13995.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005774545.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03947.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag-beta | AAF80195.1 | Cag-beta | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13803.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | YP_005777268.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 99 |
| cag5 | AAR03858.1 | Cag5 | Virulence | cag PAI | Protein | 0.0 | 99 |
| HP0524 | BAD13940.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0524 | BAD14049.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| cag5 | YP_005775727.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| HP0524 | BAD13857.1 | cag pathogenicity island protein | Virulence | cag PAI | Protein | 0.0 | 98 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| HPGAM_02680 | YP_005780259.1 | CAG pathogenicity island protein 5 | VFG0284 | Protein | 0.0 | 99 |
