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Name : HPGAM_01960 (HPGAM_01960) Accession : YP_005780119.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Unknown Product : transketolase Function : - COG functional category : - COG ID : - EC number : 2.2.1.1 Position : 386693 - 388618 bp Length : 1926 bp Strand : - Note : COG0021 Transketolase DNA sequence : ATGCGATTGAGTAACGCTGACTTAGAACGATTAAAAAGCATGGCCAACACGCTTCGCTTTTTATGTGCGGACATGATAGA TAAGGCTAATAGCGGGCATCCAGGCGTGTGCTTAGGGCTAGCTGATGTGATGGTGGTTTTAAGCTTGCACCTTAATCTAA ACCCCACTAACCCTAAATGGCTCAATAGGGACAGGTTGGTTTTTAGCGGAGGGCATGCGAGCGCGTTAGCGTATAGTTTG TTGCATTTGTGGGGCTTTGATTTGAGTTTAGACGATTTAAAGCGTTTCAGGCAATTACACTCTAAAACCCCAGGACACCC TGAATTGCACCACACCGAAGGCATTGAGATCACCACAGGCCCTTTAGGGCAGGGTTTTGCTAACGCTGTGGGCTTTAGCA TGGCGAGCCAATACGCTCAAACCCTTTTAGATAGAGAAGCGATTTCTCATAAAGTCTATTGCTTGTGTGGGGATGGGGAT TTGCAAGAAGGCATTAGTTATGAGAGCGCTTCTTTAGCCGGGCACCTTCGCCTTGATAATCTCATTGTGATTTATGACAG CAACCAGATCAGCATTGAAGGCGCTATTAATATTAGTTTTAGCGAACAGGTCAAAACGCGTTTTTTAGCGCAAAATTGGG AAGTGCTAGAATGCGATGGGCATGACTATCAAGCGATTCACAACGCTTTAGAAGAAGCCAAAAAATCCACTAAACCCACG CTTTTAATCGCTCATACGATCATTGGTAAGGGGGCTATTGGTTTAGAGGGGAGCGAAAAAACGCATGGATCGCCTTTAAA TAAAGAAGTGTTGAAACAATCCAAAGAAAACGCTCAAATCAATCCTAACGAAAGCTTTATAATTAGCCCAAAAAACAAAA TGCATTTTGAAGAAGTGAAAGTTAGGGGCGTTAGTTTAGAAGCCTTATGGGAAAAGTCCTTAAACCCTAAAACAAAAGAA AAAATCCATGCGTTAAAGAATTTTGATTTTAACGCCATCCATTACCCCGCCTTTAAAAAGGGCGAATCTCTAGCCACGAG AGTGAGTAACGGCATGATTTTAAACGCTATCGCTAAAGAATGCGAGGGCTTTTTAGGGGGGAGCGCGGATTTAGCCCCAT CCAATAACACGCAGTTGAAACACTCTGGCGATTTCCCTTTAGGGCAAAACCTGCATTTTGGGATCAGAGAGCATGCCATG GGGGCTATCACTAACGCTTTAGCGGCGTATGGCTTGTTTGTGCCTTTTTGCGCGACCTTTTTTGTGTTTAGCGATTATTT AATGCCCAGCATGCGTTTGAGCGCTTTAATGAAATTAAAAGCCCTTTTTATCTTTACGCATGACAGCATTGGCGTGGGCG AAGACGGGGCGACGCACCAGCCCATAGAGCAATTGAGCCATTTACGAGCCTTGCCGCATTTTTACGCTTTCAGACCCAGC GATGCTTTTGAAAATAAGGCTTGCATGCAAGTGGCGTTGAGTTTGAACGCCCCTAGCGCTCTTATTTTATCGCGCCAGAA TTTGCCCGTGCTAGATGAAGTCTCTAAAGAGCAGGTTTTAAAAGGGGCGTATGTTAAACACCACTCTAAAGATCCCATTA TCACGCTCGTTGCGAGCGGGAGCGAAGTCTCTTTAGCTTTAGAGAGCGCTAAGATTTTAGAGCGAGAAAATATCCCCACT CAAGTGGTGAGCGTGCCATGCTTTGATTTATTAATAGAGCAAGATGAAAGCTATTTTAAAGAACTCTTTAAGGGTAAAGT CTTAGTGATTGAAGCGAGCCGTGCGATAGAGTGGTATCGTTTTGCGGATAAAATCATTGGCATGGATTCTTTTGGGAGCT CAGCAAAAGGCGATAAACTCTTTGAAAAATTTGGCTTTAGCGTTGAAAACGTTACCGCTCAAGCTAAAAGGTTACTCAAC GCATGA Protein sequence : MRLSNADLERLKSMANTLRFLCADMIDKANSGHPGVCLGLADVMVVLSLHLNLNPTNPKWLNRDRLVFSGGHASALAYSL LHLWGFDLSLDDLKRFRQLHSKTPGHPELHHTEGIEITTGPLGQGFANAVGFSMASQYAQTLLDREAISHKVYCLCGDGD LQEGISYESASLAGHLRLDNLIVIYDSNQISIEGAINISFSEQVKTRFLAQNWEVLECDGHDYQAIHNALEEAKKSTKPT LLIAHTIIGKGAIGLEGSEKTHGSPLNKEVLKQSKENAQINPNESFIISPKNKMHFEEVKVRGVSLEALWEKSLNPKTKE KIHALKNFDFNAIHYPAFKKGESLATRVSNGMILNAIAKECEGFLGGSADLAPSNNTQLKHSGDFPLGQNLHFGIREHAM GAITNALAAYGLFVPFCATFFVFSDYLMPSMRLSALMKLKALFIFTHDSIGVGEDGATHQPIEQLSHLRALPHFYAFRPS DAFENKACMQVALSLNAPSALILSRQNLPVLDEVSKEQVLKGAYVKHHSKDPIITLVASGSEVSLALESAKILERENIPT QVVSVPCFDLLIEQDESYFKELFKGKVLVIEASRAIEWYRFADKIIGMDSFGSSAKGDKLFEKFGFSVENVTAQAKRLLN A |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| tktA | AAO17218.1 | TktA | Not tested | tcd island | Protein | 9e-98 | 43 |
| APECO1_2641 | YP_859417.1 | transketolase | Not tested | Not named | Protein | 2e-87 | 41 |
