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Name : lysS (HPGAM_00940) Accession : YP_005779919.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.6 Position : 187314 - 188819 bp Length : 1506 bp Strand : + Note : COG1190 Lysyl-tRNA synthetase (class II) DNA sequence : ATGTTTTCTAACCAATACATCCAACAACGCATCCATAAAGCCAATAGCTTGAGAGAAGAAGGCAAAAACCCTTATAAAAA TGGCTTGAAACGAAGCCTGACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGATTTAGAAGAGCCTAAAGACA AAGAAAAATGCGAGAGCGTTGTAGGGAGGGTCAAGCTCTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAATTGAAGAT GAAAGCGCGATTTTACAAGCTTATGTTTCGCAAAATGAATTGAACGATGAGTTTAAAAGCTTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTGAAAGGTTTCCCTTTTGCTACCAAAACCGGTGAATTAAGCGTTCATGCCCTAGAATTTCACA TTTTAAGCAAAACCATCGTGCCTTTGCCTGAGAAATTTCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAC TTGGATTTGATCGTCAATCCTGGCGTTAAAGATGTGTTTAAAAAGCGCAGTTTGATCGTCTCTAGCGTGCGGAAATTTTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTCATCA CTTATCATAACGCCTTAGAAATTGAAAGGTATTTGAGAATCGCCCCAGAATTATACCTTAAACGCTTGATTGTAGGGGGG TTTGAGGCGGTGTTTGAAATCAATCGTAATTTCAGGAATGAGGGCATGGATCACAGCCATAACCCCGAATTCACGATGAT TGAATTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGTTGTTTGACTACTTGCTAAAGACTT TAAATTTAGATTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCCTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGCAAGGGTATTTTAGAAAAAGAAGACAGGCTTTTAGCTTATTTGTTAGAGCAGGGCAT TAAAGTAGAGCCAAACCTCACTCATGGCAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCATAAGCTTATTAACC CCACTTTTGTAACCGAATATCCCATTGAGATTAGCCCTTTAGCCAGACGCAACGATAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCAGGTAAAGAAATCGCTAATGGCTTTAGCGAGTTGAATGACCCTTTAGATCAACTAGAGCGCTT TAAAAATCAAGTGGCTGAAAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTACGTGTGGGCCCTAGCCC ATGGGATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGCTGCTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTGTTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTTGAGGGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKDLEEPKDKEKCESVVGRVKLLRLMGKACFIKIED ESAILQAYVSQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPGVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLDSKIIYNDMEVDFNQTSVISYLDA LETIGGISKGILEKEDRLLAYLLEQGIKVEPNLTHGKLLAEAFDHFVEHKLINPTFVTEYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVEGEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 8e-106 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005779919.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 5e-106 | 51 |
