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Name : HPGAM_08360 (HPGAM_08360) Accession : YP_005781317.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Unknown Product : outer membrane protein Function : - COG functional category : - COG ID : - EC number : - Position : 1688076 - 1688891 bp Length : 816 bp Strand : + Note : COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen DNA sequence : ATGAATATATTCAAGCGTGTTATTAGTGTAGGGGTAATTGTTTTAGGTTTGTTTAACCTTTTAGACGCCAAACACCACAA AGAAAAAAAAGAAGACCACAAAATCACTCGTGAGCTTAAAGTGGGCGCTAACCCTGTGCCGCATGCGCAAATCTTGCAAT CAGTCGTGGATGATTTGAAAGAGAAAGGGATCAAATTAGTAATCGTGTCTTTTACCGATTATGTGTTGCCTAATTTAGCG CTCAATGACGGTTCTTTAGACGCGAATTACTTCCAACACCGCCCTTATTTGGATCGGTTTAATTTGGACAGAAAAATGCA CCTTGTTGGTTTGGCCAATATCCATGTGGAGCCTTTAAGATTTTATTCTCAAAAAATCACAGACATTAAAAACCTTAAAA AAGGCTCAGTGATTGCTGTGCCAAATGATCCGGCCAATCAAGGCAGGGCGTTGATTTTATTGCATAAGCAAGGCCTTATC GCTCTCAAAGACCCAAGCAATCTATACGCTACGGAGTTTGATATTGTTAAAAATCCTTACAACATCAAAATCAAACCCCT AGAAGCCGCGTTATTGCCTAAGGTTTTAGGGGATGTGGATGGGGCTATCATAACAGGGAATTATGCCTTGCAAGCAAAAC TCACCGGCGCGTTATTTTCAGAAGACAAGGACTCGCCTTATGCTAATCTTGTAGCCTCTCGTGAGGATAACGCGCAAGAT GAAGCGATAAAAGCGTTGATTGAAGCCTTACAAAGTGAAAAGACTAGGAAATTTATTTTGGATACCTATAAGGGGGCGAT TATCCCGGCTTTTTAA Protein sequence : MNIFKRVISVGVIVLGLFNLLDAKHHKEKKEDHKITRELKVGANPVPHAQILQSVVDDLKEKGIKLVIVSFTDYVLPNLA LNDGSLDANYFQHRPYLDRFNLDRKMHLVGLANIHVEPLRFYSQKITDIKNLKKGSVIAVPNDPANQGRALILLHKQGLI ALKDPSNLYATEFDIVKNPYNIKIKPLEAALLPKVLGDVDGAIITGNYALQAKLTGALFSEDKDSPYANLVASREDNAQD EAIKALIEALQSEKTRKFILDTYKGAIIPAF |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SAAV_0786 | YP_003281709.1 | ABC transporter substrate-binding protein | Not tested | SaPIAv | Protein | 7e-35 | 41 |
