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Name : HPGAM_07790 (HPGAM_07790) Accession : YP_005781212.1 Strain : Helicobacter pylori Gambia94/24 Genome accession: NC_017371 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : 6.1.1.11 Position : 1568971 - 1570218 bp Length : 1248 bp Strand : - Note : COG0172 Seryl-tRNA synthetase DNA sequence : ATGATTGATAAAAGACTTTTGTTGCAAGATTTTGACAAGGTGGCTCTTTCTTTAAAAAAGCGTAACCATGCGATGGACGA TGAATTAGAGCGTTTGCGCGAAGCCATCACGCATTATAAAAAGCAACTCATTGAATTAGAAGGCTTGCAAGCCTTTCAAA ACAAGGTTTCTAAAGAGTTTGGTATCAAAATGGCTCAAAAAATGGATACAAGCGATCTCAAAAAAGAGCTAGAAAACAAT AAAATCAAATTGAACGAGCTTTCCAAAAGCGTGGGCGAAGCAGAACAAGAAATGGATTTAAAGCTTTCCATAATCCCTAA TTTAGTGGATGAAAAAACCCCTTTAGGCGCGAATGAAGAAGACAATATAGAGATTAAAAAAATCTTAACCCCAAGAAATT TTACTTTCAAGCCTAAAGAGCATTTTGAACTCGCCCAAAAAAACGGCTGGATTGATTTTGAAAGCGGCGTGAAACTCGCC AAAAGCCGTTTTTCGGTCATTAGGGGTTTTGGGGCGAAAATTTATCGCGCGCTCATTTATTTAATGCTGGATTTTAATGA AAAAAACGGCTTTGAAATCATCTACACGCCGGCGTTAGTGAATGAAAAAATGCTTTTTGGGACCGGGCAATTACCCAAAT TCAAAGAAGATGTTTTCAAAATAGAAAATGAAAATTTGTATCTGATCCCCACCGCTGAAGTAACGCTCACCAATCTATAC AACGACACCATTATTAGCGTTGAAAACCTCCCCATTAAAATGACCGGGCACACGCCTTGTTTTAGGAGCGAAGCAGGGAG TGCGGGCAAGGACACAAGGGGGATGATAAGACAACACCAATTTGATAAAGTAGAGCTAGTGGCTATCACGCACCCTAAAG AAAGCGATGCCATGCAAGAATATATGCTAGAGAGCGCGAGCGAAATTTTAAAAGCTTTGGAATTACCGCACCGGTTCGTG CAATTGTGCAGCGGGGATTTAGGCTTTAGCGCGAGTAACACGATAGATATTGAAGTGTGGTTACCCGGGCAAAATTGTTA CAGAGAAATCAGCTCCGTGTCTAACACGAGGGATTTTCAGGCTAGGCGCGCCAAAATCCGCTTCAAAGAAAATCAAAAAA ACCAATTAGCACACACCTTAAACGGCTCTTCTTTAGCGGTAGGAAGGACTATGGTCGCTTTAATGGAAAACCACCAGCAA GCGGATGGGAGCATCCATATTCCTAAGGCGTTAGAAAAATACCTTTAA Protein sequence : MIDKRLLLQDFDKVALSLKKRNHAMDDELERLREAITHYKKQLIELEGLQAFQNKVSKEFGIKMAQKMDTSDLKKELENN KIKLNELSKSVGEAEQEMDLKLSIIPNLVDEKTPLGANEEDNIEIKKILTPRNFTFKPKEHFELAQKNGWIDFESGVKLA KSRFSVIRGFGAKIYRALIYLMLDFNEKNGFEIIYTPALVNEKMLFGTGQLPKFKEDVFKIENENLYLIPTAEVTLTNLY NDTIISVENLPIKMTGHTPCFRSEAGSAGKDTRGMIRQHQFDKVELVAITHPKESDAMQEYMLESASEILKALELPHRFV QLCSGDLGFSASNTIDIEVWLPGQNCYREISSVSNTRDFQARRAKIRFKENQKNQLAHTLNGSSLAVGRTMVALMENHQQ ADGSIHIPKALEKYL |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 4e-75 | 45 |
