Gene Information

Name : HPGAM_05275 (HPGAM_05275)
Accession : YP_005780731.1
Strain : Helicobacter pylori Gambia94/24
Genome accession: NC_017371
Putative virulence/resistance : Unknown
Product : integrase/recombinase (XERCD family) protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 1068198 - 1069271 bp
Length : 1074 bp
Strand : -
Note : COG0582 Integrase

DNA sequence : 
ATGAGTGATTGTAAAATGAGTAGGGTTAGTAGGGAATTGTTTGATAATATTAAGTCATTTTTGCACTATAAGCTTAAAAC
AATGATACGCATTCAAAGCGTGAATGATTTGGAATTGATCTTAAAATGGCAAGATAGAGTTTTAGAGTGCCAAAGTCTTA
TCGCATTGAAAGAGCTCAATCACAAGCTTTATAATCAAGGCGTTAGGCATACGATTATGATGCAAGGCTTGTTTTTGTTC
TTTGAATATTTTGATAATAGGATTAAGCTCAAATCCTTGTGCAATCTAGCAGAAGAACAGGTTATAGACTTCTTATTTGG
ATTAGCCAAAAACAGGAAACCAAGCTCTATGGCTAAATATGTGATGGTTTTAAGACAATTCTTTGATTATTTAGACAGAA
AAAGAAACTATAGTTTTGATTTTGAACTTAAAAATCTATCATTTGCCAAGAAAGAAACGCATTTGCCTAAACATTTGAAT
AAAAATGATTTTAAGGCTTTTATCCAAGCTCTTCTAAAATACCGTCCCAAAACCAGTTTTGAAAAACGCAACCAGTGTAT
TTTACTGCTTATTGCATTAGGGGGGTTAAGGAAGTTTGAAGCCTTAGATTTGGAGCTAAAAAACATTGCTTTAGAAAATA
ACCACTACCGCCTTTTAATTAAAGGCAAAAACAACCAAGAGAGATACGCTTATATTGAAAAAGAGTTTTTGCAAGTTCCT
TTGAATGCATGGCTAAGCGATACTAAACGATTAAAGAGTTTTAAGGGGCGTTTTGTGTTTAAAAAAGCAAAAAACAACAC
CACGCAAAAAACTTGCTCTTTAAAGGGCTTTATCGCTAAAATTTTTAAGCTCTCTAATATTGATGAAAACTCTTATGGAT
TAGGTTTGCATCTTTTTAGGCATAGTTTTGCTACTTTTATTTATGATGAAACACAGGATTTGGTTTTAACTTCAAGAGCG
TTGGGTCATAGTTCTTTGCTTTCTACTAAAATCTATATCCATACCACTCAAGAACACAATAAAAAAGTGGCTCTTGTGCT
AAAAGGATGGTTAAAAGATGAAAAAAGCGATTAG

Protein sequence : 
MSDCKMSRVSRELFDNIKSFLHYKLKTMIRIQSVNDLELILKWQDRVLECQSLIALKELNHKLYNQGVRHTIMMQGLFLF
FEYFDNRIKLKSLCNLAEEQVIDFLFGLAKNRKPSSMAKYVMVLRQFFDYLDRKRNYSFDFELKNLSFAKKETHLPKHLN
KNDFKAFIQALLKYRPKTSFEKRNQCILLLIALGGLRKFEALDLELKNIALENNHYRLLIKGKNNQERYAYIEKEFLQVP
LNAWLSDTKRLKSFKGRFVFKKAKNNTTQKTCSLKGFIAKIFKLSNIDENSYGLGLHLFRHSFATFIYDETQDLVLTSRA
LGHSSLLSTKIYIHTTQEHNKKVALVLKGWLKDEKSD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HPP12_0437 YP_002301073.1 integrase/recombinase XercD family Not tested cag PAI Protein 1e-149 95