Gene Information

Name : cag4 (HPF16_0832)
Accession : YP_005779067.1
Strain : Helicobacter pylori F16
Genome accession: NC_017368
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 868755 - 869264 bp
Length : 510 bp
Strand : -
Note : -

DNA sequence : 
TTGTTTGAGAAATGGATTGGTCTTTTTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATTAGTTTCAA
GCAATATGAGAATCTTATCCATATTCACCAAAAAGGTTGCGACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCTT
TATTGGAAAGTTCTTTAGGGTTGAATAATAAGCGTGAAATTTCCCTAAAAGACACTTCCTATTCCATGTTTCACATCACC
CTAAACACCGCTAAAAAATTTTACCCCACCTATTCTAAAACGCTCCTCAAGTTCAAATTGCTCAATGATGTGGATTTTGC
GATTTCATTGGCTAAAAGAATTTTGAAAGAAAATTTTGATTATTACAAACAAAAACACCCTAATAAAAGCGTGTATCAAA
TAGTAGAAATGGCAGTAGGTGCTTACAATGGGGGAATGAAACACAACCCTAATGGCGCTTATGTGAAGAAATTCCGTTGC
ATTTATTCTCAGGTGCGCTATAACGGGTAG

Protein sequence : 
MFEKWIGLFLLLNSLAYPCQKVTISFKQYENLIHIHQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKFKLLNDVDFAISLAKRILKENFDYYKQKHPNKSVYQIVEMAVGAYNGGMKHNPNGAYVKKFRC
IYSQVRYNG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 5e-76 100
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-76 100
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 5e-75 99
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-75 99
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-74 98
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-75 98
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 2e-74 98
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-75 98
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-74 97
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-74 96
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 1e-73 96
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-73 96
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-53 96
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 3e-72 95
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 1e-71 94
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 3e-70 93
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-71 93
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 1e-71 93
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-72 93
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 8e-67 93
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 7e-70 92
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 5e-70 92
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 2e-65 92
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 3e-69 91

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag4 YP_005779067.1 cag island protein VFG0283 Protein 3e-72 94