Gene Information

Name : cagU (HPF16_0824)
Accession : YP_005779059.1
Strain : Helicobacter pylori F16
Genome accession: NC_017368
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 854149 - 854796 bp
Length : 648 bp
Strand : -
Note : -

DNA sequence : 
ATGAACGATACAACAGAGCATCATGGATCTAATTCGCTAAACGCCCCATCACCTAGCAACTCACAGAGCAATGATCTTTT
AAATTTGCTAGACTCGTTATATCCCAAAGGGAGTTTAGGGGAGCAAAGATTTCACGAAGCTCTAAAGAATCAAGAAGAGT
TGAAAAATATCCTAATAGAAATAGAAAAGCTACCGCAAGAAAAAAGGTATGAACTTCTGATGCAAATAGGGCAAGCCAAA
CAGAGAATAATGGAAGCATACGCTCATTCATTCTTGGGGTATATAGGGGGACTAGAGCATCTGTTAGGATTATGTATGGG
TGGGATATTTGTTTTGTTTGCAATCTATTTTGTATTTTTAAGAACTAGCAAAAACACGGATTTGGTGGAAAGTCTAAAAA
CAAAACTAAAACTTCAGTATTTTTACTATGCCTTTGGTGCAGGTGCGGTTTTGTTTTTTGGATTAGAAACAATTAGATCT
ATTTATGAACTATATATATTAGGAATTGGTAGCACTAATGACAAGGTGCTCTTTGTTTTGAAAAACATTTGCTTCATAGG
TATGGGCTATTTGATTTATAAAGTTATTAAGGTCATTGGTATAAAAAATTTTATCAATGGTCTTTTCACTTCAAAGAAAC
AAGAATAA

Protein sequence : 
MNDTTEHHGSNSLNAPSPSNSQSNDLLNLLDSLYPKGSLGEQRFHEALKNQEELKNILIEIEKLPQEKRYELLMQIGQAK
QRIMEAYAHSFLGYIGGLEHLLGLCMGGIFVLFAIYFVFLRTSKNTDLVESLKTKLKLQYFYYAFGAGAVLFFGLETIRS
IYELYILGIGSTNDKVLFVLKNICFIGMGYLIYKVIKVIGIKNFINGLFTSKKQE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagU YP_005779059.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 100
HP0531 BAD13783.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-77 100
cagU YP_005774538.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 100
HP0531 BAD14056.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-77 100
HP0531 BAD14002.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-77 99
HP0531 BAD13947.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 99
cagU YP_005775734.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 99
HP0531 BAD13837.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-77 99
HP0531 BAD13864.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 99
HP0531 BAD13810.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-77 99
HP0531 BAD13892.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-75 99
cagU YP_005777275.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-76 99
cag-U AAF80202.1 Cag-U Virulence cag PAI Protein 1e-76 99
cag11 AAR03866.1 Cag11 Virulence cag PAI Protein 8e-77 99
cag11 AAR03924.1 Cag11 Virulence cag PAI Protein 7e-77 99
HP0531 BAD13974.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-77 99
cagU AGC69798.1 cag pathogenicity island protein U Virulence cag PAI Protein 2e-76 98
HP0531 BAD14030.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-76 98
cagU YP_003728733.1 cag pathogenicity island protein U Virulence cag PAI Protein 3e-76 98
cag11 AAR03894.1 Cag11 Virulence cag PAI Protein 3e-76 98
orf18 NP_223198.1 cag island protein Virulence cag PAI Protein 2e-76 98
cag11 AAR03955.1 Cag11 Virulence cag PAI Protein 6e-76 97
HP0531 BAD13919.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-75 97
HP0531 NP_207327.1 cag pathogenicity island protein (cag11) Virulence cag PAI Protein 7e-76 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagU YP_005779059.1 cag pathogenicity island protein VFG0291 Protein 2e-76 97