Gene Information

Name : cagS (HPF16_0822)
Accession : YP_005779057.1
Strain : Helicobacter pylori F16
Genome accession: NC_017368
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 852490 - 853089 bp
Length : 600 bp
Strand : +
Note : -

DNA sequence : 
ATGAGTAATAACATGCGAAAACTCTTCTCAATGATTGCTGACTCAAAAGATAAGAAAGAAAAACTTATTGAGAGTTTGCA
AGAGAACGAACTTTTAAACACTGATGAAAAAAAGAAAATCATAGATCAAATAAAAACCATGCATGATTTTTTCAAACAGA
TGCATACAAACAAGGGAGCGTTAGATAAGGTTCTAAGAAATTACATGAAAGATTATCGCGCTGTTATTAAAAGCATTGGT
GTTGATAAATTTAAAAAGGTTTATCGATTACTTGAGAGTGAGACTATGGAGCTGTTGCATGCGATTACAGAGAATCCTAA
TTTCTTATTCTCTAAATTTGATCGATCAATTCTTGGAATATTTCTGCCTTTCTTCAGTAAGCCCATCATGTTCAAGATGA
GTATTAGAGAAATGGACTCGCAAATAGAATTGTATGGCACTAAACTCCCACTATTGAAATTGTTTGTGATGACAGATGAA
GAAGTGAATTTCTATGCTAATCTAAAAACCATTGAACAATATAACGACTATGTTAGGGATTTGCTAATGAAATTTGATCT
TGAAAAATACATGAAAGAAAAAGGAGTGCAAAATGCTTGA

Protein sequence : 
MSNNMRKLFSMIADSKDKKEKLIESLQENELLNTDEKKKIIDQIKTMHDFFKQMHTNKGALDKVLRNYMKDYRAVIKSIG
VDKFKKVYRLLESETMELLHAITENPNFLFSKFDRSILGIFLPFFSKPIMFKMSIREMDSQIELYGTKLPLLKLFVMTDE
EVNFYANLKTIEQYNDYVRDLLMKFDLEKYMKEKGVQNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0534 BAD13786.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-89 100
HP0534 BAD13895.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-89 100
cagS YP_005779057.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-88 100
HP0534 BAD14032.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-88 99
HP0534 NP_207330.1 cag pathogenicity island protein (cag13) Virulence cag PAI Protein 6e-87 99
HP0534 BAD14005.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-88 99
HP0534 BAD13950.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-88 99
cag13 AAR03868.1 Cag13 Virulence cag PAI Protein 2e-88 99
HP0534 BAD14059.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-88 99
HP0534 BAD13840.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-88 99
cagS YP_005774536.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-88 99
HP0534 BAD13813.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-88 99
HP0534 BAD13977.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-87 98
cagS NP_223200.1 cag island protein Virulence cag PAI Protein 3e-87 98
cagS AAF80204.1 CagS Virulence cag PAI Protein 1e-87 98
HP0534 BAD13867.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-87 98
cagS YP_005777277.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-87 98
cag13 AAR03957.1 Cag13 Virulence cag PAI Protein 9e-88 98
cagS YP_005775736.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-87 98
cag13 AAR03896.1 Cag13 Virulence cag PAI Protein 9e-88 98
HP0534 BAD13922.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-86 97
cag13 AAR03926.1 Cag13 Virulence cag PAI Protein 4e-87 97
cagS YP_003728731.1 cag pathogenicity island protein S Virulence cag PAI Protein 2e-87 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagS YP_005779057.1 cag pathogenicity island protein VFG0293 Protein 2e-87 99