Gene Information

Name : cagN (HPF16_0820)
Accession : YP_005779055.1
Strain : Helicobacter pylori F16
Genome accession: NC_017368
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 847601 - 848521 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAGGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
AAAAAGAAGTTACAGAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCG
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAACAACTCTTCTATTCAAAAAAAAGCGGCTAAACACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGACAATCCTAATAGCAATTCTTCCACTGAAACCAAATCCA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTTTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGACATCAAGGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCTAGACAACACTTGAGTGGTTTAAAACTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCATGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAACAACCACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAGCATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKGIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTFHQRHDEKEVTEEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLLPN
EWRTPEIEIIINECIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNHQDTTNASEFGATDTKENEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-113 100
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-113 100
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-111 99
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-112 99
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-112 99
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 99
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-113 99
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 99
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-109 98
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-110 98
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 98
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-110 97
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-110 97
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 2e-108 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 3e-108 96
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 3e-108 96
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 2e-108 96
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 4e-107 95
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-107 94
cagN AAF80207.2 CagN Virulence cag PAI Protein 1e-107 94
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 1e-105 94
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 7e-109 94
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-106 93
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 1e-106 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagN YP_005779055.1 cag pathogenicity island protein VFG0297 Protein 8e-109 96