Gene Information

Name : cagD (HPF57_0572)
Accession : YP_005777286.1
Strain : Helicobacter pylori F57
Genome accession: NC_017367
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 593369 - 593992 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGATCAACAATAAGAGTAATAAAAAAATAAGAGACTTTTTTTTGAAAGTTCTCTTAAGTCTCGTTGTTTTCAGCTCGTA
TGGGTCAGCGAATGATGACAAAGAAGCCAAAAAAGAAGCACAAGAAAAAGAAAAAAACACTCCCAATGGGCTTGTTTATA
CAAATTTAGATTTTGATAGTTTTAAAGCGACTATCAAAAATTTGAAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCC
GATATTATCAAAGATGAAGTTTTTGACTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCAGTTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGGTTGAATGTGGAATTGCAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTCCTATCATTGCACGGGGAAACAAGAGAA
ATTCTATGCGATGATAAGCTGTATAATGTTTTATTGGCCGTATTCAATTCTTATGATCCTAATGATCTTTTGAAACATAT
TAGCACTATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNKSNKKIRDFFLKVLLSLVVFSSYGSANDDKEAKKEAQEKEKNTPNGLVYTNLDFDSFKATIKNLKDKKVTFKEVNP
DIIKDEVFDFVIVNRVLKKIKDLKHYDPVIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLHGETRE
ILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-75 100
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 2e-72 99
cagD AAF80210.1 CagD Virulence cag PAI Protein 3e-71 99
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 1e-73 98
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 2e-73 98
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-73 97
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 97
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-73 97
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-73 97
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-73 97
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 5e-73 97
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 3e-72 97
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 8e-72 96
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-72 96
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 9e-73 96
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 95
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-72 95
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-73 95
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-72 95
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-72 95
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-71 94
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-71 94
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-72 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagD YP_005777286.1 cag pathogenicity island protein VFG0304 Protein 3e-73 96