Gene Information

Name : cagM (HPF57_0564)
Accession : YP_005777278.1
Strain : Helicobacter pylori F57
Genome accession: NC_017367
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 583987 - 585117 bp
Length : 1131 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTGCAAAAATCGTTTTTGGCTCATTGGTTGCGTTTGGAGTTTTGTCGGCTAATGTGGAGCAGTTTGGTTCATTTTT
CAACGAGATAAAAAAAGAACAAGAAGAGGTGGCTGCAAAAGAAGACGCTCTTAAGGCTAAAAAGAAGCTCTTAAACAATA
CGCATGATTTCTTAGAAGACTTGATTTTTAGAAAACAAAAAATCAAAGAGCTTGTGGATCATAGAGCTAAAGTTCTTTTA
GATTTAGAAAACAAATACAAAAAAGAAAAAGAGGCTCTAGAGAAAGAGACAAGGGGTAAAATCCTTACTGCTAAGTCAAA
GGCTTATGGTGATCTAGAGCAAGCCTTAAAAGATAACCCTCTCTATAAGAAACTTCTTCCTAACCCTTATGCCTATGTTT
TAAACCAAGAAACATTCACCAAAGAAGATAAAGAGCGTTTGAGTTATTACTACCCTCAAGTGAAAACGAGCAGTATTTTT
AAAAAAACTACCGCTACCACTAAAGATAAGGCTCAGGCTTTGCTTCAAATGGGTGTGTTTTCTTTAGATGAAGAACAAAA
CAAAAAAGCGAGCCGATTAGCTTTATCTTATAAGCAAGCGATTGAAGAATATTCCAATAACATTTCTAATTTATTGAGCA
GAAAAGAATTGGATAATATAGATTATTACTTACAGCTTGAAAGAAACAAGTTCGACACCAAAGCAAAAGATATTGCTCAA
AAAGCTACTAACACGCTTATTTTTAACTCGGAACGCTTGGCGTTTAGCATGGCGATTGATAAGATCAATGAAAAATACTT
AAGGGGCTATGAGGCTTTTTCTAACTTATTGAAAAATGTCAAAGATGATGTGGAATTGAATACTCTGACTAAAAACTTTA
CCAATCAAAAATTGAGTTTCGCTCAAAAACAAAAATTGTGTTTGTTGGTTTTAGACAGCTTCAATTTTGATACTCAATCC
AAAAAATCTATATTAAAAAAGACTAATGAATACAATATTTTCGTAGATAGCGATCCTATGATGAGCGATAAAACAACTAT
GCAAAAAGAACACTACAAGATATTTAATTTCTTCAAAACAGTGCTTTCTGCATACCGAAACAATGTTACCAAGAATAATC
CCTTTGAATAG

Protein sequence : 
MLAKIVFGSLVAFGVLSANVEQFGSFFNEIKKEQEEVAAKEDALKAKKKLLNNTHDFLEDLIFRKQKIKELVDHRAKVLL
DLENKYKKEKEALEKETRGKILTAKSKAYGDLEQALKDNPLYKKLLPNPYAYVLNQETFTKEDKERLSYYYPQVKTSSIF
KKTTATTKDKAQALLQMGVFSLDEEQNKKASRLALSYKQAIEEYSNNISNLLSRKELDNIDYYLQLERNKFDTKAKDIAQ
KATNTLIFNSERLAFSMAIDKINEKYLRGYEAFSNLLKNVKDDVELNTLTKNFTNQKLSFAQKQKLCLLVLDSFNFDTQS
KKSILKKTNEYNIFVDSDPMMSDKTTMQKEHYKIFNFFKTVLSAYRNNVTKNNPFE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagM YP_005777278.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-143 100
HP0537 BAD13843.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-142 99
HP0537 BAD13789.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-143 99
HP0537 BAD13953.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-142 99
cagM YP_005775737.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-142 99
HP0537 BAD13898.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-142 99
HP0537 BAD13925.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-140 99
cagM YP_005774534.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-142 99
HP0537 BAD13870.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-142 99
cagM YP_005779056.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-143 99
cagM AGC69800.1 cag pathogenicity island protein M Virulence cag PAI Protein 9e-141 98
cagM AAC44695.1 CagM Virulence cag PAI Protein 6e-141 98
cag16 AAR03899.1 Cag16 Virulence cag PAI Protein 6e-141 98
cagM NP_223203.1 cag island protein Virulence cag PAI Protein 2e-140 98
cag16 AAR03929.1 Cag16 Virulence cag PAI Protein 4e-141 98
cagM YP_003728727.1 cag pathogenicity island protein M Virulence cag PAI Protein 1e-140 98
HP0537 BAD13980.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-141 98
HP0537 BAD13816.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-140 98
HP0537 NP_207333.1 cag pathogenicity island protein (cag16) Virulence cag PAI Protein 1e-140 98
cag16 AAR03960.1 Cag16 Virulence cag PAI Protein 1e-140 98
cag16 AAR03871.1 Cag16 Virulence cag PAI Protein 1e-140 98
HP0537 BAD14062.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-134 97
HP0537 BAD14008.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-138 97
HP0537 BAD14035.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-139 97

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagM YP_005777278.1 cag pathogenicity island protein VFG0296 Protein 4e-141 98