Gene Information

Name : cag4 (HPF57_0553)
Accession : YP_005777267.1
Strain : Helicobacter pylori F57
Genome accession: NC_017367
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 564373 - 564882 bp
Length : 510 bp
Strand : +
Note : -

DNA sequence : 
TTGTTTGAGAAATGGATTGGTCTCTTTTTACTTCTTAATTCCTTAGCCTATCCATGCCAAAAAGTAACCATTAGTTTCAA
GCAGTATGAGAATCTTATCCATATCCACCAAAAAGGTTGCGACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCTT
TATTGGAAAGTTCTTTAGGGTTGAACAACAAGCGCGAAATTTCCCTAAAAGACACTTCCTATTCCATGTTTCACATCACC
TTAAACACCGCTAAAAAATTCTACCCCACCTATTCTAAAACGCTCCTCAAATACAAATTGCTCAATGATGTGGATTTTGC
GATTGTGTTGGCTAAAAGAATTTTGAAAGAAAATTTTGATTATTACAAACAAAAACACCCTAATAAAAGCGTGTATCAAT
TAGTAGAAATGGCAGTAGGCGCTTACAATGGGGGAATGAAACACAACCCTAATGGCGCTTATGTGAAAAAGTTCCGCTGT
GTCTATTCTCAGGTGCGCTACAACGAGTAG

Protein sequence : 
MFEKWIGLFLLLNSLAYPCQKVTISFKQYENLIHIHQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKYKLLNDVDFAIVLAKRILKENFDYYKQKHPNKSVYQLVEMAVGAYNGGMKHNPNGAYVKKFRC
VYSQVRYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 1e-68 100
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-68 99
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-67 99
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-68 99
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-68 99
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-67 98
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 2e-67 98
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 6e-68 98
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-66 96
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-66 96
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 4e-66 96
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 4e-65 95
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-66 95
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 7e-65 95
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 5e-61 94
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 1e-64 94
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-45 94
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-64 93
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-64 93
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 1e-59 92
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 1e-62 92
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 6e-63 92
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 1e-62 92
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 4e-63 92

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag4 YP_005777267.1 cag island protein VFG0283 Protein 3e-65 94