Gene Information

Name : cagD (HPF32_0521)
Accession : YP_005775745.1
Strain : Helicobacter pylori F32
Genome accession: NC_017366
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 565433 - 566056 bp
Length : 624 bp
Strand : -
Note : -

DNA sequence : 
TTGATCAACAATAAGAGTAATAAAAAAATAAGAGACTTTTTTTTAAAAGTTCTCTTAAGTCTCGTTGTTTTCAGTTCTTA
TGGGTCAGCGAATGATGACAAAGAAGCCAAAAAAGAAGCACAAGAAAAAGAAAAAAACACTCCTAGTGGTCGTGTTTATA
CGAATTTAGATTTTGATAGTTTCAAGGCGACTATCAAAAATTTGCAAGACAAGAAAGTAACTTTCAAAGAAGTCAATCCT
GATATTATCAAAAATGAAGTTTTTGATTTCGTGATTGTCAATAGAGTCCTTAAAAAAATAAAGGATTTGAAGCATTACGA
TCCAATTATTGAAAAAATCTTTGATGAAAAGGGTAAAGAAATGGGGTTGAATGTGGAATTGCAGATCAATCCTGAAGTGA
AAGACTTTTTTACTTTCAAAAGCATCAGCACGACCAACAAACAACGCTGCTTTCTATCATTGCGCGGGGAAACAAGAGAA
ATTCTATGCGATGATAAGCTGTATAATATTTTGTTGGCCGTATTCAATTCTTATGATCCTAATGATCTTTTGAAACATAT
TAGCACTATAGAGTCTCTCAAAAAAATCTTTTATACGATTACATGTGAAGCGGTATATCTATAA

Protein sequence : 
MINNKSNKKIRDFFLKVLLSLVVFSSYGSANDDKEAKKEAQEKEKNTPSGRVYTNLDFDSFKATIKNLQDKKVTFKEVNP
DIIKNEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETRE
ILCDDKLYNILLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
HP0545 BAD13878.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-75 100
cagD YP_005775745.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-75 100
HP0545 BAD14016.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-74 99
HP0545 BAD13851.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-74 97
HP0545 BAD13961.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-74 97
cagD YP_005777286.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-73 97
cag24 AAR03968.1 Cag24 Virulence cag PAI Protein 2e-72 96
cag24 AAR03879.1 Cag24 Virulence cag PAI Protein 6e-73 96
HP0545 BAD14070.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 96
cagD YP_003728719.1 cag pathogenicity island protein D Virulence cag PAI Protein 2e-71 96
cagD NP_223211.1 cag island protein Virulence cag PAI Protein 3e-70 96
cagD AAF80210.1 CagD Virulence cag PAI Protein 3e-70 96
cag24 AAR03907.1 Cag24 Virulence cag PAI Protein 2e-72 95
cagD YP_005774526.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-73 95
HP0545 BAD13988.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-73 95
cagD YP_005779048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-73 95
HP0545 BAD13824.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-73 95
HP0545 BAD13906.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 95
HP0545 BAD13797.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-73 95
HP0545 BAD14043.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-71 95
cag24 AAR03937.1 Cag24 Virulence cag PAI Protein 7e-72 95
HP0545 NP_207341.1 cag pathogenicity island protein (cag24) Virulence cag PAI Protein 1e-71 94
HP0545 BAD13933.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-71 93

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagD YP_005775745.1 cag pathogenicity island protein VFG0304 Protein 4e-72 94