Gene Information

Name : cagH (HPF32_0517)
Accession : YP_005775741.1
Strain : Helicobacter pylori F32
Genome accession: NC_017366
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 560068 - 561180 bp
Length : 1113 bp
Strand : -
Note : -

DNA sequence : 
ATGGCAGGCACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTATCGGAAATTTCCTCAATCATCTCAAGCACGAG
TGGTGTTGCAGGGCCATTTGCAGGAATAGTAGCGGGTGCCATGTCAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCGCAAATGACCGCTATCATGACCCAATACAATCAGAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTAGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACCACCCCTAAAAATCCTAGCGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCTAGTGTGCCAACA
ACGGTTGAAATAATGAGCGGTATATTAGGCAATATTACAAGTGCGGCACCAAAATACGCCCTAGCTCTACAAGAGCAATT
GCGTTCTCAAGCAAGCAACAGCTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCACTTGTTG
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACGCCCATGAGTGTTTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTAGCTACTAATGCCCTAACTTCAGGCGCTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAAGT
TCTTGTCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAGAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGTTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTAAAATCGCATTTGACTTACCTTGATTACAT
CAAAGACAAGCTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMSAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVEIMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAK
YQALATNALTSGANPMTTPACPIGDKVLVVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 1e-160 100
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-161 100
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-160 99
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-159 99
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 8e-159 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 6e-160 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-159 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 6e-160 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-159 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 2e-159 99
cagH AAC44699.1 CagH Virulence cag PAI Protein 2e-160 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-159 99
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-159 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-158 99
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 1e-158 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-159 99
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-159 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 1e-158 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 1e-159 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 5e-159 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 8e-159 99
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 3e-159 98
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-157 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagH YP_005775741.1 cag island protein VFG0300 Protein 3e-159 99