Gene Information

Name : cag4 (HPF32_0502)
Accession : YP_005775726.1
Strain : Helicobacter pylori F32
Genome accession: NC_017366
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 536643 - 537152 bp
Length : 510 bp
Strand : +
Note : -

DNA sequence : 
TTGTTTGAGAAATGGATTGGTCTCTTTCTACTTCTTGGTTCTTTAGCCTATTCATGCCAAAAGGTAACCATTAGTTTCAA
GCAGTATGAGAATCTTATCCATATCCACCAAAAAGGTTGCGACAATGAAGTGGTGTGCAGAACGCTCATCTCTATCGCTT
TATTGGAAAGTTCTTTAGGGTTGAACAACAAGCGCGAAATTTCCCTAAAAGACACTTCCTATTCCATGTTTCACATCACT
TTGAACACCGCTAAAAAATTCTACCCCACCTATTCTAAAACGCTCCTCAAATACAAATTGCTCAATGATGTGGATTTTGC
GATTGGGTTGGCTAAAAGAATTTTGAAAGAAAATTTTGATTATTACAAACAAAAACACCCTAATAAAAGCATGTATCAAA
TAGTAGAAATGGCAGTAGGCGCTTACAATGGAGGAATGAAACACAACCCTAATGGCGCTTATGTGAAAAAGTTCCGCTGC
ATTTATTCTCAGGTGCACTACAACGAGTAG

Protein sequence : 
MFEKWIGLFLLLGSLAYSCQKVTISFKQYENLIHIHQKGCDNEVVCRTLISIALLESSLGLNNKREISLKDTSYSMFHIT
LNTAKKFYPTYSKTLLKYKLLNDVDFAIGLAKRILKENFDYYKQKHPNKSMYQIVEMAVGAYNGGMKHNPNGAYVKKFRC
IYSQVHYNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag4 YP_005775726.1 cag island protein Virulence cag PAI Protein 1e-68 100
HP0523 BAD13856.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-69 100
HP0523 BAD13829.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-67 98
HP0523 BAD13884.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-67 98
HP0523 BAD13775.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-67 96
HP0523 BAD13802.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-67 96
cag4 YP_005777267.1 cag island protein Virulence cag PAI Protein 3e-66 96
HP0523 BAD13939.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-67 96
cag4 YP_005779067.1 cag island protein Virulence cag PAI Protein 1e-66 96
cag4 YP_005774546.1 cag island protein Virulence cag PAI Protein 1e-66 96
HP0523 BAD14048.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-66 95
HP0523 BAD13994.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-65 94
cag4 AAR03855.1 Cag4 Virulence cag PAI Protein 1e-63 93
HP0523 NP_207319.1 cag pathogenicity island protein (cag4) Virulence cag PAI Protein 4e-63 92
cag4 AAR03915.1 Cag4 Virulence cag PAI Protein 1e-62 92
cag4 AAR03946.1 Cag4 Virulence cag PAI Protein 3e-63 92
HP0523 BAD13911.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-64 92
cag4 AAR03886.1 Cag4 Virulence cag PAI Protein 2e-59 92
cag-gamma AAF80194.1 Cag-gamma Virulence cag PAI Protein 4e-61 90
cag4 YP_003728743.1 cag pathogenicity island protein gamma Virulence cag PAI Protein 2e-61 90
cag4 AGC69794.1 cag pathogenicity island protein 4 Virulence cag PAI Protein 1e-61 90
HP0523 BAD14022.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-62 90
orf9 NP_223190.1 cag island protein Virulence cag PAI Protein 4e-58 90
HP0523 BAD13966.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-45 88

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag4 YP_005775726.1 cag island protein VFG0283 Protein 1e-63 92