Gene Information

Name : cag3 (HPF32_0501)
Accession : YP_005775725.1
Strain : Helicobacter pylori F32
Genome accession: NC_017366
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 535188 - 536633 bp
Length : 1446 bp
Strand : +
Note : -

DNA sequence : 
ATGTTTAGAAAACTAGCAACCGCTGTATCGCTCATAGGCTTACTAACCTCTAACACTCTTTATACTAAAGAAATAAGTGA
AGCCGATAGGGTCATTAAGGCCACTAAAGAAACTAAAGAAACCAAGAAAGAAGCTAAACGACTCAAAAAAGAAGCCAGAC
AACGCCAACAGATCCCTGATCATAAGAAACCTCAATATGTTTCTGTTGATGACACAAAAACTCAAGCGCTTTTTGATATA
TACGACACCTTGAATGTGAATGACAAAAGCTTTGGGGATTGGTTTGGTAATAGCGCTTTGAAAGACAAAACCTATCTCTA
CGCTATGGATCTATTGGATTACAACAACTATCTATCCATAGAAAACCCCATTATCAAAACAAGAGCAATGGGAACCTATG
CGGATCTCATCATCATCACAGGCTCACTAGAACAAGTCAATGGGTATTACAACATTCTAAAAGCGCTCAACAAACGAAAC
GCTAAGTTTGTCTTAAAAATCAATGAAAACCTGCCTTACGCCCAAGCGACTTTTTTGAGAGTGCCAAAAAGAAGCGATCC
CAATGCCCATACGCTTGATAAGGGAGCGTCAATTGATGAGAATAAGCTTTTTGAACAACAAAAACGCGCGTATTTCAACT
ACGCCAACGATGTGATCTGCAGACCCAATGATGAAGTGTGTTCGCCCCTAAGAGATGAAATGGTAGCTATGCCCACTAGC
GATAGCGCTACTCAAAAACCTAATATCATTGCTCCTTATAGTTTGTATAGACTAAAAGAGACAAATAACGCCAATGAGGC
TCAACCATCACCTTATGCCACTCAAACCGCTCCTGAAAACAGCAAAGAGAAGCTCATAGAAGAGCTAATCGCTAACTCCC
AACTCATAGCCAATGAAGAAGAGAGGGAAAAGAAACTCTTAGCAGAAAAAGAAAAACAAGAGGCTGAATTGGCTAAATAC
AAGCTCAAAGACCTAGAAAATCAAAAGAAACTAAAAGCTTTAGAAGCAGAGTTGAAAAAGAAAAATGCTAAGAAACCTAG
AGTGGTGGAAGTGCCTATTTCTCCTAGAACAAGTAATTCTTTTGAAACAATGAGAGTTGTCAAAGAAAAAGAAAACTATA
ATGGATTGTTAGTGGATAAAGAAACCACGATCAAACGAAGCTATCAAGGGACTTTGATCAGTGAAAATTCTTACAGCAAA
AAAACACCTCTCAACCCTAATGACTTGAGAAGCTTAGAAGAAGAAATTAAGAGCTACTATATTAAGTCTAATGGCTTGTG
TTATGCTAATGGCATTAGTCTCTATGTCAAAATCAAAAACGACCCCTATAAAGAGGGAATGCTGTGTGGCTATGAAAGTA
TTCAAAATCTGCTCTCACCTCTAAAGGATAAGCTCAAGTACGACAAGCAAAAATTACAAAAAGCGTTACTGAAAGATTCA
AAGTAA

Protein sequence : 
MFRKLATAVSLIGLLTSNTLYTKEISEADRVIKATKETKETKKEAKRLKKEARQRQQIPDHKKPQYVSVDDTKTQALFDI
YDTLNVNDKSFGDWFGNSALKDKTYLYAMDLLDYNNYLSIENPIIKTRAMGTYADLIIITGSLEQVNGYYNILKALNKRN
AKFVLKINENLPYAQATFLRVPKRSDPNAHTLDKGASIDENKLFEQQKRAYFNYANDVICRPNDEVCSPLRDEMVAMPTS
DSATQKPNIIAPYSLYRLKETNNANEAQPSPYATQTAPENSKEKLIEELIANSQLIANEEEREKKLLAEKEKQEAELAKY
KLKDLENQKKLKALEAELKKKNAKKPRVVEVPISPRTSNSFETMRVVKEKENYNGLLVDKETTIKRSYQGTLISENSYSK
KTPLNPNDLRSLEEEIKSYYIKSNGLCYANGISLYVKIKNDPYKEGMLCGYESIQNLLSPLKDKLKYDKQKLQKALLKDS
K

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cag3 YP_005775725.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-168 100
HP0522 BAD13855.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-168 100
HP0522 BAD13938.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-166 99
cag3 YP_005774547.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-167 99
HP0522 BAD13801.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-167 99
HP0522 BAD13828.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-166 99
HP0522 BAD13774.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-166 99
HP0522 BAD13883.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 99
cag3 YP_005777266.1 cag pathogenicity island protein Virulence cag PAI Protein 7e-166 99
HP0522 BAD14047.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-166 99
cag3 YP_005779068.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-166 99
HP0522 BAD13910.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-165 98
cag3 AAR03854.1 Cag3 Virulence cag PAI Protein 4e-164 97
cag-delta AAF80193.1 Cag-delta Virulence cag PAI Protein 3e-164 97
cag3 YP_003728744.1 cag pathogenicity island protein delta Virulence cag PAI Protein 4e-163 97
HP0522 NP_207318.1 cag pathogenicity island protein (cag3) Virulence cag PAI Protein 3e-164 97
cag3 AGC69793.1 cag pathogenicity island protein 3 Virulence cag PAI Protein 3e-163 97
HP0522 BAD14021.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-163 97
cag3 AAR03885.1 Cag3 Virulence cag PAI Protein 4e-162 97
cag3 AAR03945.1 Cag3 Virulence cag PAI Protein 5e-164 97
HP0521 BAD13993.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-162 97
HP0521 BAD13965.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-162 97
cag3 AAR03914.1 Cag3 Virulence cag PAI Protein 5e-163 96
orf8 NP_223189.1 cag island protein Virulence cag PAI Protein 6e-160 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cag3 YP_005775725.1 cag pathogenicity island protein VFG0282 Protein 1e-164 97