|
Name : lysS (HPF32_0192) Accession : YP_005775416.1 Strain : Helicobacter pylori F32 Genome accession: NC_017366 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : - COG ID : - EC number : - Position : 193347 - 194852 bp Length : 1506 bp Strand : + Note : - DNA sequence : ATGTTTTCCAACCAATACATCCAACAACGCATCCATAAAGCCAACAGCTTGAGAGAAGAAGGGAAAAACCCTTATAAAAA TGGCTTAAAACGAAGCCTTACAAACGCCGCTTTTTTAGAAAAATACGCTTATGTTAAGGGTTTAGAAGAGCCTAAAGACA AAGAAAAATGCGAGAGTATTGTAGGGAGGGTCAAGCTTTTGCGTTTAATGGGTAAGGCATGTTTTATTAAAATTGAAGAT GAAAGCACGATTTTGCAAGCCTATATTTCGCAAAATGAATTGAATGATGAATTTAAAAGCCTGAAAAAGCATTTAGAAGT GGGCGATATTGTGTTGGTAAAGGGTTTCCCTTTTGCTACCAAAACCGGTGAATTAAGCGTTCATGCCCTAGAATTTCATA TTTTAAGCAAAACCATCGTGCCTTTGCCTGAAAAGTTTCATGGACTGAGCGATATAGAATTGCGTTACCGCCAGCGCTAC TTGGATTTGATAGTCAATCCTAGCGTTAAAGATGTGTTTAAAAAGCGCAGTTTGATTGTTTCTAGCGTGCGGAAATTTTT TGAAATGGAAGGGTTTTTAGAAGTGGAAACCCCCATGATGCACCCCATTCCTGGCGGGGCGAACGCAAGGCCTTTTATCA CTTATCATAACGCTTTGGAAATTGAAAGGTATTTAAGAATCGCTCCAGAATTATACCTCAAACGCTTGATTGTGGGGGGG TTTGAAGCGGTGTTTGAAATCAATCGTAATTTCAGAAATGAGGGCATGGATCACAGCCATAACCCCGAATTTACGATGAT TGAGTTTTATTGGGCGTATCACACTTATGAAGATTTGATTGAACTCAGTAAGAGGCTGTTTGACTACTTGCTAAAGACTT TGAACTTACCTTCAAAAATCATTTATAACGATATGGAAGTGGATTTCAACCAAACGAGCGTGATTTCTTATTTGGACGCT TTAGAAACAATAGGGGGCATTAGTAAAAATGTTTTAGAAAAAGAAGACAGGCTTTTGGCTTATTTGTTAGAGCAAGGTAT CAAAGTAGAGCCAAACCTCACTTATGGTAAATTGCTCGCTGAAGCGTTTGATCATTTTGTAGAGCATAAGCTCATTAACC CCACTTTTGTAACCCAATACCCCATTGAGATTAGCCCCTTAGCCAGACGCAACGACAGTAACCCTAATATTGCTGACAGG TTTGAATTGTTTATTGCAGGGAAAGAAATCGCTAACGGCTTTAGCGAGTTGAACGATCCTTTAGATCAATTAGAACGCTT TAAAAATCAAGTGGCTGAGAAAGAAAAAGGCGATGAAGAAGCCCAATACATGGATGAAGATTACGTGTGGGCCCTAGCCC ATGGAATGCCCCCCACTGCAGGGCAAGGCATAGGCATTGACCGATTAGTGATGCTACTCACTGGAGCTAAAAGCATTAAA GATGTGATTTTATTCCCAGCGATGCGTCCTGTTAAAAACGATTTTAATGTGGAGAGTGAAGAATAA Protein sequence : MFSNQYIQQRIHKANSLREEGKNPYKNGLKRSLTNAAFLEKYAYVKGLEEPKDKEKCESIVGRVKLLRLMGKACFIKIED ESTILQAYISQNELNDEFKSLKKHLEVGDIVLVKGFPFATKTGELSVHALEFHILSKTIVPLPEKFHGLSDIELRYRQRY LDLIVNPSVKDVFKKRSLIVSSVRKFFEMEGFLEVETPMMHPIPGGANARPFITYHNALEIERYLRIAPELYLKRLIVGG FEAVFEINRNFRNEGMDHSHNPEFTMIEFYWAYHTYEDLIELSKRLFDYLLKTLNLPSKIIYNDMEVDFNQTSVISYLDA LETIGGISKNVLEKEDRLLAYLLEQGIKVEPNLTYGKLLAEAFDHFVEHKLINPTFVTQYPIEISPLARRNDSNPNIADR FELFIAGKEIANGFSELNDPLDQLERFKNQVAEKEKGDEEAQYMDEDYVWALAHGMPPTAGQGIGIDRLVMLLTGAKSIK DVILFPAMRPVKNDFNVESEE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 4e-105 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_005775416.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-105 | 50 |
