Gene Information

Name : cagN (HPF30_0788)
Accession : YP_005774533.1
Strain : Helicobacter pylori F30
Genome accession: NC_017365
Putative virulence/resistance : Virulence
Product : cag pathogenicity island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 843783 - 844703 bp
Length : 921 bp
Strand : -
Note : -

DNA sequence : 
TTGAAAAGTATCTTCAAAAAACTAGGTTCTGTCGCTCTTTATTTTTTAGTTATTTATGGGGGCTTAAACGCTATCAATAC
AGCATTATTACCGAGTGAATACAAAAAATTAGTGGCTTTAGGCTTTAAAAAAATCAAAACATTCCATCAAAGACATGACG
ACGAAGAAATTACAAAAGAGGAAAAAGAATTCGCCACTAACGCTTTGAGAGAAAAATTACGAAATGATAGGGCGAGAGCA
GAGCAAATTCAAAAGAATATTGAAGCGTTTGAAAAAAAGAATAACTCTTCTATTCAAAAAAAAGCGGCTAAACACAAAGG
ATTACAAGAATTAAACGAAACTAACGCTAACCCTTTGAATGACAACCCTAATAGCAATTCTTCCACTGAAACCAAATCCA
ATAAAGATGATAACTTTGATGAGATGATCAATAAGGTGAATGAAGCTTTTGTGAAACCTGCTGCTCCGCTTGTGCCTAAT
GAGTGGAGAACACCTGAAATTGAAATCATTATCAATGAGTGTATTATTTCAAGCAACGATTACGATGGGTTAAGAAAGTG
TTTGATCAAAGGCATCAAAGATCAAAAAATTCTTGCCCCCTTATTAGAAAAAATTCAAGAAATAGAGACAGAAAATAACA
AGTTTTCCAGACAACACTTGAGTGGTTTAAAGCTCGCTCTTAATAACAGCAACAATAGAACCTTTCTTATAGCTTCATGC
GCTATTTGTGAGAAGAGAAAAAAAGAAATGGAGCAAGAAAACAATCACCAAGATACTACAAATGCAAGTGAGTTTGGAGC
TACTGATACAAAAGAAAATGAAGCAAAAGATGCAGCATTCTCAAACAATCGCTCTAAATCTGAACTGCCCAATAGCGTCA
TTAATCAAATAGAACAAAGCATCGCTCATGGAAAAAAATAG

Protein sequence : 
MKSIFKKLGSVALYFLVIYGGLNAINTALLPSEYKKLVALGFKKIKTFHQRHDDEEITKEEKEFATNALREKLRNDRARA
EQIQKNIEAFEKKNNSSIQKKAAKHKGLQELNETNANPLNDNPNSNSSTETKSNKDDNFDEMINKVNEAFVKPAAPLVPN
EWRTPEIEIIINECIISSNDYDGLRKCLIKGIKDQKILAPLLEKIQEIETENNKFSRQHLSGLKLALNNSNNRTFLIASC
AICEKRKKEMEQENNHQDTTNASEFGATDTKENEAKDAAFSNNRSKSELPNSVINQIEQSIAHGKK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagN YP_005774533.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-119 100
cagN YP_005777279.1 cag pathogenicity island protein Virulence cag PAI Protein 6e-113 99
HP0538 BAD14063.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-113 99
HP0538 BAD13954.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-114 99
cagN YP_005775738.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-116 99
HP0538 BAD13871.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-116 99
HP0538 BAD13817.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-113 99
HP0538 BAD13844.1 cag pathogenicity island protein Virulence cag PAI Protein 3e-111 98
HP0538 BAD13790.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 98
HP0538 BAD13981.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-114 98
HP0538 BAD13899.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-113 98
HP0538 BAD14009.1 cag pathogenicity island protein Virulence cag PAI Protein 8e-113 98
cagN YP_005779055.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-112 98
HP0538 NP_207334.1 cag pathogenicity island protein (cag17) Virulence cag PAI Protein 9e-115 97
cag17 AAR03961.1 Cag17 Virulence cag PAI Protein 2e-113 97
cagN YP_003728726.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-113 97
cag17 AAR03872.1 Cag17 Virulence cag PAI Protein 8e-115 97
cag17 AAR03930.1 Cag17 Virulence cag PAI Protein 3e-115 97
HP0538 BAD14036.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-112 96
HP0538 ABC25004.1 cag pathogenicity island protein N Virulence cag PAI Protein 2e-109 96
cagN NP_223204.1 cag island protein Virulence cag PAI Protein 2e-112 95
HP0538 BAD13926.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-112 95
cagN AAF80207.2 CagN Virulence cag PAI Protein 2e-112 95
cag17 AAR03900.1 Cag17 Virulence cag PAI Protein 2e-110 94

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagN YP_005774533.1 cag pathogenicity island protein VFG0297 Protein 4e-115 97