Gene Information

Name : cagH (HPF30_0785)
Accession : YP_005774530.1
Strain : Helicobacter pylori F30
Genome accession: NC_017365
Putative virulence/resistance : Virulence
Product : cag island protein
Function : -
COG functional category : -
COG ID : -
EC number : -
Position : 840722 - 841834 bp
Length : 1113 bp
Strand : +
Note : -

DNA sequence : 
ATGGCAGGTACACAAGCTATATATGAATCATCTTCTGCAGGCTTCTTGTCGGAAATTTCCTCAATCATCTCAAGCACGAG
TGGTGTCGCAGGGCCATTTGCAGGAATAGTAGCGGGTGCTATGTCAGCAGCGATTATTCCTATTGTTGTGGGATTTACTA
ATCCACAAATGACCGCTATCATGACCCAATACAATCAAAGCATCGCTGAAGCCGTAAGCATGCCTATGAAAGCCGCTAAC
CAACAATACAACCAATTGTATCAAGGTTTTAACGATCAAAGCATGGCTGTGGGGAACAATATCTTAAATATCAGCAAATT
AACAGGGGAATTTAACGCGCAAGGCAACACGCAAGGCGCGCAAATTAGTGCTGTTAATAGTCAGATTGCAAGCATTTTAG
CGAGTAACACGACCCCTAAAAATCCTAGTGCTATTGAAGCTTATGCGACGAATCAAATCGCTGTTCCCAGTGTGCCAACA
ACGGTTGAAACGATGAGCGGTATCTTAGGCAATATTACAAGTGCAGCACCGAAATACGCCCTAGCTCTACAAGAGCAACT
GCGTTCTCAAGCAAGCAACAGTTCAATGAATGATACAGCCGATTCCCTTGATAGCTGTACCGCTTTAGGTGCGCTTGCTA
GCTCATCAAAAGTGTTTTTTAGTTGCATGCAAATTTCTATGACTCCTATGAGTGTCTCTATGCCCACTGTTTATGCCAAA
TACCAAGCGTTGGCCACTAATGCCCTAACTTCAGGCGTTAATCCTATGACCACTCCTGCATGCCCTATTGGGGACAAAGT
TCTTGCCGTTTATTGCTATGCTGAAAAAGTAGCAGAAATTTTGAGAGAATACTATATAGAATTTGTGAAAAACAATACCA
ATTTGTTGCAAAACGCTTCTCAAATGATACTTAATCAATCAGGATTAGCTACTAGCACCTATGACACTCAAGCGATTTCT
AACATAAGCTCGCTATATAATTACAATATAGTAGCGAATAAATCTTTTTTGAAATCGCATTTGACTTATCTTGATTACAT
CAAAGACAAACTTAAGGGGCAAAAAGATAGCTACTTAACAGAAAGGGTGCAAACTAAAATAATCGTGAAGTGA

Protein sequence : 
MAGTQAIYESSSAGFLSEISSIISSTSGVAGPFAGIVAGAMSAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSMPMKAAN
QQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPT
TVETMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALASSSKVFFSCMQISMTPMSVSMPTVYAK
YQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILNQSGLATSTYDTQAIS
NISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
cagH YP_005774530.1 cag island protein Virulence cag PAI Protein 3e-160 100
HP0541 BAD13929.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-159 99
cag20 AAR03964.1 Cag20 Virulence cag PAI Protein 4e-158 99
cagH AAC44699.1 CagH Virulence cag PAI Protein 3e-160 99
HP0541 BAD13957.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-159 99
HP0541 BAD13820.1 cag pathogenicity island protein Virulence cag PAI Protein 4e-158 99
HP0541 NP_207337.1 cag pathogenicity island protein (cag20) Virulence cag PAI Protein 6e-158 99
cag20 AAR03903.1 Cag20 Virulence cag PAI Protein 3e-159 99
cagH YP_003728723.1 cag pathogenicity island protein H Virulence cag PAI Protein 2e-158 99
HP0541 BAD14066.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 99
HP0541 BAD13874.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-158 99
cagH YP_005775741.1 cag island protein Virulence cag PAI Protein 1e-158 99
HP0541 BAD14039.1 cag pathogenicity island protein Virulence cag PAI Protein 9e-159 99
HP0541 BAD13847.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-159 99
cag20 AAR03875.1 Cag20 Virulence cag PAI Protein 6e-159 99
cagH YP_005777282.1 cag island protein Virulence cag PAI Protein 1e-159 99
HP0541 BAD14012.1 cag pathogenicity island protein Virulence cag PAI Protein 1e-159 99
cag20 AAR03933.1 Cag20 Virulence cag PAI Protein 6e-159 99
cagH YP_005779052.1 cag island protein Virulence cag PAI Protein 7e-160 99
HP0541 BAD13793.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-160 99
cagH AGC69803.1 cag pathogenicity island protein H Virulence cag PAI Protein 6e-159 99
HP0541 BAD13902.1 cag pathogenicity island protein Virulence cag PAI Protein 5e-160 99
HP0541 BAD13984.1 cag pathogenicity island protein Virulence cag PAI Protein 2e-158 98
cagH NP_223207.1 cag island protein Virulence cag PAI Protein 6e-159 98

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
cagH YP_005774530.1 cag island protein VFG0300 Protein 3e-158 99