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Name : clpB (HPF30_1032) Accession : YP_005774777.1 Strain : Helicobacter pylori F30 Genome accession: NC_017365 Putative virulence/resistance : Virulence Product : ATP-dependent protease binding subunit Function : - COG functional category : - COG ID : - EC number : - Position : 1099027 - 1101597 bp Length : 2571 bp Strand : - Note : - DNA sequence : ATGAATTTATTTGAAAAAATGACTGACCAATTGCATGAGACTTTAGACAGCGCGCTCGCTCTAGCTTTACACCATAAAAA CGCTGAAGTAACGCCCTTGCACATGCTTTTTGTCATGCTCAATAACTCCCAAGGCATCCTCATTCAAGCCTTACAAAAAA TGTCTGTGGATATTCAAGCCTTAAGGCTTAGCGTTCAAAGCGAGTTGAATAAGTTTGCTAAAGTTTCACAAATCAACAAG CAAAATATCCAATTAAACCAAGCTCTAATCCAAAGTTTAGAAAACGCTCAAGGCTTAATGGCTAAAACGGGCGATTCTTT CATCGCTACAGATGTGTATCTTTTGGCGAATATGAGCCTTTTTGAAAGCGTTCTAAAACCTTATTTAGACACTAAAGAAT TGCAAAAAACTTTAGAGGCTTTGAGGAAAGGTGCGACTATCCAAGATAAAAACGATGATTCTAATTTGGAAAGTTTGGAA AAATTTGGCATTGATTTGACGCAAAAAGCCTTAGAAAATAAGCTTGATCCGGTGATTGGGAGGGATGAAGAAATCATTCG CATGATGCAAATTTTGATAAGAAAAACAAAAAATAACCCTATTTTACTGGGTGAGCCTGGAGTGGGGAAAACGGCGGTTG TGGAGGGTTTGGCCCAACGCATTGTGAATAAGGAAGTGCCTAAAACGCTTTTAAACAAACGAGTCGTCGCTTTAGATCTA AGCTTATTGGTGGCTGGAGCGAAGTATAGAGGCGAGTTTGAAGAGCGCTTGAAAAAGGTGATTGAAGAAGTTAAAAAAAG CACGAATGTGATTTTATTCATTGATGAAATCCACACGATTGTAGGGGCTGGGGCGAGTGAGGGGGGCATGGATGCGGCTA ATATTTTAAAACCCGCACTCGCTAGGGGGGAATTGCACACGATTGGAGCGACCACTTTGAAAGAATACCGCAAGTATTTT GAAAAAGACATGGCGTTACAAAGGCGTTTCCAACCCATTTTACTCAATGAGCCTAGCATCAATGAAGCTTTACAGATTCT AAGGGGGTTAAAAGAAACTTTAGAAACGCACCATAATATCACCATCAACGACTCCGCGCTCATAGCGAGCGCTAAACTCT CTAGCCGTTATATCACCGATAGGTTTTTACCCGATAAAGCGATTGATTTGATTGATGAGGGGGCGGCCCAATTAAAAATG CAAATGGAATCCGAGCCGGCAAAACTCTCTAGCGTTAAGCGCTCCATTCAAAGATTAGAAATGGAAAAACAAGCCCTTGA AATGGAAAAAAAAGAGAGCAATGTCAAACGCATGCAAGAAATCCTTAAAGAATTGAGCGATTTGAAAGAAGAAAAAATCC AATTAGAAGCGCAATTTGAAAACGAAAAAGAAGTGTTTAGAGAAATTTCACGCTTGAAAATGGAAACGGAAAGCTTGAAA AAAGAGGCTGAGAGGTTTAAACGCAATGGGGATTACCAGCAAGCGGGTGAAATTGAATACTCTAAAATCCCTGAAAATAA AAAGAAAGAAGAAGAATTGCAGCATAAATGGGAAGCGATGCAACAAAACGGGGCGTTATTGCAAAACGCTTTAACCGAAA ACAACATCGCTGAGATCGTGAGCCAATGGACGCATATCCCGGTTCAAAAAATGCTCCAGAGCGAAAAAAATAGGGTTTTA AACATTGAAAGCGAATTGCAAAAAAGAGTGGTGGGGCAAGAAAAAGCAATCAAAGCGATCGCTAAAGCGATTAAAAGGAA TAAGGCCGGGCTTAGCGATAGCAATAAACCCATAGGGAGCTTTCTCTTTTTAGGGCCAACGGGCGTGGGTAAAACTGAGA GCGCTAAAGCTTTGGCGCAATTCTTGTTTGATAGCGATAAAAATCTTATAAGAATTGACATGAGCGAATACATGGAAAAA CATGCAATAAGCCGTCTTATTGGGGCTGCTCCTGGGTATGTGGGCTATGAAGAAGGTGGGCAATTGACCGAAGCGGTGCG CAGAAAACCCTATAGCGTGGTGCTGTTAGATGAAGTGGAAAAAGCCCATCCGGATGTGTTTAATCTTTTGTTGCAGGTTT TAGATGAAGGGCATTTAACCGATAGTAAGGGCGTGAGAGTGGATTTCAAAAACACGATTTTGATTTTAACCAGCAATGTG GCTAGCGGTGCGCTTTTGGAAGAAAATTTGAGTGAAGCCGATAAACAAAAAGCGATTAAAGAGAGCTTGAGGCAATTCTT CAAGCCGGAATTTTTAAACCGCTTAGATGAAATCATCTCCTTTAACGCCCTAGATAGTCATGCTATCGCTAATATCGTGG GGATTCTCTTTGAAAACATTCAAAAAAAAGCGCTTGAAAGAGGCATTAATATAACCCTAGACGAAGAGGCAAAAGAATTG ATCGCTGAAGCGGGATTTGACAGATTTTATGGCGCTAGACCCCTAAAGCGCGCGCTCTATGAAATGGTAGAAGACAAGCT CGCTGAACTCATTTTAGAGGATAAGATTAAAGAGAATGACAGCGTGGCGTTTGTGGTAGAAAATAACGAAATTGTGCCTA AGATTAAGTGA Protein sequence : MNLFEKMTDQLHETLDSALALALHHKNAEVTPLHMLFVMLNNSQGILIQALQKMSVDIQALRLSVQSELNKFAKVSQINK QNIQLNQALIQSLENAQGLMAKTGDSFIATDVYLLANMSLFESVLKPYLDTKELQKTLEALRKGATIQDKNDDSNLESLE KFGIDLTQKALENKLDPVIGRDEEIIRMMQILIRKTKNNPILLGEPGVGKTAVVEGLAQRIVNKEVPKTLLNKRVVALDL SLLVAGAKYRGEFEERLKKVIEEVKKSTNVILFIDEIHTIVGAGASEGGMDAANILKPALARGELHTIGATTLKEYRKYF EKDMALQRRFQPILLNEPSINEALQILRGLKETLETHHNITINDSALIASAKLSSRYITDRFLPDKAIDLIDEGAAQLKM QMESEPAKLSSVKRSIQRLEMEKQALEMEKKESNVKRMQEILKELSDLKEEKIQLEAQFENEKEVFREISRLKMETESLK KEAERFKRNGDYQQAGEIEYSKIPENKKKEEELQHKWEAMQQNGALLQNALTENNIAEIVSQWTHIPVQKMLQSEKNRVL NIESELQKRVVGQEKAIKAIAKAIKRNKAGLSDSNKPIGSFLFLGPTGVGKTESAKALAQFLFDSDKNLIRIDMSEYMEK HAISRLIGAAPGYVGYEEGGQLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNV ASGALLEENLSEADKQKAIKESLRQFFKPEFLNRLDEIISFNALDSHAIANIVGILFENIQKKALERGINITLDEEAKEL IAEAGFDRFYGARPLKRALYEMVEDKLAELILEDKIKENDSVAFVVENNEIVPKIK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| clpC | YP_005163377.1 | ATP-dependent Clp protease ATP-binding subunit | Not tested | Not named | Protein | 2e-148 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| clpB | YP_005774777.1 | ATP-dependent protease binding subunit | VFG0079 | Protein | 2e-158 | 43 |
| clpB | YP_005774777.1 | ATP-dependent protease binding subunit | VFG2076 | Protein | 6e-112 | 42 |
